Literature DB >> 3905255

Curved DNA.

E N Trifonov.   

Abstract

A priori considerations and the concept of the sequence-dependent local curving of the DNA axis. Experimental evidence: electric dichroism (relaxation time measurements); anomalous electrophoretic mobility and gel-filtration of some restriction fragments of DNA; one-sided binding of the nucleosomal DNA to the mica surface. Theoretical predictions concerning the nucleotide sequences of the curved DNA. Discovery of the dinucleotide periodicity in the chromatin DNA. The sequence periodicity as a tool for mapping of the nucleosomes along the sequences. Preferential binding of the histone octamers to the curved pieces of DNA--sequence analysis predictions and comparison with experiments: Theoretical and experimental estimates of the tilt and roll angles for different combinations of the neighboring base-pairs. Inherent sequence-dependent curvature and apparent persistence length of DNA.

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Year:  1985        PMID: 3905255     DOI: 10.3109/10409238509082540

Source DB:  PubMed          Journal:  CRC Crit Rev Biochem        ISSN: 0045-6411


  74 in total

1.  Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure.

Authors:  Y Cui; C Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

2.  Global structure and mechanical properties of a 10-bp nucleosome positioning motif.

Authors:  M Roychoudhury; A Sitlani; J Lapham; D M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

Review 3.  Evolutionary consequences of nonrandom damage and repair of chromatin domains.

Authors:  T Boulikas
Journal:  J Mol Evol       Date:  1992-08       Impact factor: 2.395

4.  RIP60, a mammalian origin-binding protein, enhances DNA bending near the dihydrofolate reductase origin of replication.

Authors:  M S Caddle; L Dailey; N H Heintz
Journal:  Mol Cell Biol       Date:  1990-12       Impact factor: 4.272

5.  Comparative analysis of sequence periodicity among prokaryotic genomes points to differences in nucleoid structure and a relationship to gene expression.

Authors:  Jan Mrázek
Journal:  J Bacteriol       Date:  2010-05-21       Impact factor: 3.490

6.  Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles.

Authors:  A Bolshoy; P McNamara; R E Harrington; E N Trifonov
Journal:  Proc Natl Acad Sci U S A       Date:  1991-03-15       Impact factor: 11.205

7.  7-Deaza-2'-deoxyadenosine and 3-deaza-2'-deoxyadenosine replacing dA within d(A6)-tracts: differential bending at 3'- and 5'-junctions of d(A6).d(T6) and B-DNA.

Authors:  F Seela; T Grein
Journal:  Nucleic Acids Res       Date:  1992-07-11       Impact factor: 16.971

8.  Variety of genomic DNA patterns for nucleosome positioning.

Authors:  Ilya Ioshikhes; Sergey Hosid; B Franklin Pugh
Journal:  Genome Res       Date:  2011-07-12       Impact factor: 9.043

9.  Identification of sequence elements contributing to the intrinsic curvature of the mouse satellite DNA repeat.

Authors:  P Carrera; M A Martínez-Balbás; J Portugal; F Azorín
Journal:  Nucleic Acids Res       Date:  1991-10-25       Impact factor: 16.971

10.  Sequence effects on local DNA topology.

Authors:  V P Chuprina; A A Lipanov; S G Kim; A Kintanar; B R Reid
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-15       Impact factor: 11.205

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