Literature DB >> 3889346

A protein structure from nuclear magnetic resonance data. lac repressor headpiece.

R Kaptein, E R Zuiderweg, R M Scheek, R Boelens, W F van Gunsteren.   

Abstract

A procedure is described to determine the three-dimensional structure of biomolecules from nuclear magnetic resonance data. This procedure combines model building with a restrained molecular dynamics algorithm, in which distance information from nuclear Overhauser effects is incorporated in the form of pseudo potentials. The method has been applied to the N-terminal DNA-binding domain or headpiece (amino acid residues 1 to 51) of the lac repressor from Escherichia coli, for which no crystal structure is available. The relative orientation of the three helices of the headpiece is similar to that of the three homologous helices found in the cI repressor of bacteriophage lambda.

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Year:  1985        PMID: 3889346     DOI: 10.1016/0022-2836(85)90036-1

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  49 in total

1.  An improved structural characterisation of reduced French bean plastocyanin based on NMR data and local-elevation molecular dynamics simulation.

Authors:  Denise Steiner; Wilfred F van Gunsteren
Journal:  Eur Biophys J       Date:  2012-06-16       Impact factor: 1.733

2.  Molecular dynamics simulation using weak-coupling NOE distance restraining.

Authors:  A P Nanzer; T Huber; A E Torda; W F van Gunsteren
Journal:  J Biomol NMR       Date:  1996-10       Impact factor: 2.835

3.  Methods of NMR structure refinement: molecular dynamics simulations improve the agreement with measured NMR data of a C-terminal peptide of GCN4-p1.

Authors:  Jozica Dolenc; John H Missimer; Michel O Steinmetz; Wilfred F van Gunsteren
Journal:  J Biomol NMR       Date:  2010-06-04       Impact factor: 2.835

4.  On using oscillating time-dependent restraints in MD simulation.

Authors:  Bettina Keller; Markus Christen; Chris Oostenbrink; Wilfred F van Gunsteren
Journal:  J Biomol NMR       Date:  2006-12-16       Impact factor: 2.835

5.  Weighting of experimental evidence in macromolecular structure determination.

Authors:  Michael Habeck; Wolfgang Rieping; Michael Nilges
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-30       Impact factor: 11.205

6.  13C- 13C NOESY spectra of a 480 kDa protein: solution NMR of ferritin.

Authors:  Manolis Matzapetakis; Paola Turano; Elizabeth C Theil; Ivano Bertini
Journal:  J Biomol NMR       Date:  2007-06-07       Impact factor: 2.835

7.  Multi-conformational peptide dynamics derived from NMR data: a new search algorithm and its application to antamanide.

Authors:  R Brüschweiler; M Blackledge; R R Ernst
Journal:  J Biomol NMR       Date:  1991-05       Impact factor: 2.835

8.  Statistical analysis of double NOE transfer pathways in proteins as measured in 3D NOE-NOE spectroscopy.

Authors:  G W Vuister; R Boelens; A Padilla; R Kaptein
Journal:  J Biomol NMR       Date:  1991-11       Impact factor: 2.835

9.  Complete relaxation matrix refinement of NMR structures of proteins using analytically calculated dihedral angle derivatives of NOE intensities.

Authors:  J E Mertz; P Güntert; K Wüthrich; W Braun
Journal:  J Biomol NMR       Date:  1991-09       Impact factor: 2.835

Review 10.  Biomolecular Assemblies: Moving from Observation to Predictive Design.

Authors:  Corey J Wilson; Andreas S Bommarius; Julie A Champion; Yury O Chernoff; David G Lynn; Anant K Paravastu; Chen Liang; Ming-Chien Hsieh; Jennifer M Heemstra
Journal:  Chem Rev       Date:  2018-10-03       Impact factor: 60.622

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