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Literature DB >> 388350

Determination of base pairing in Escherichia coli and Bacillus stearothermophilus 5S RNAs by infrared spectroscopy.

B Appel, V A Erdmann, J Stulz, T Ackerman.

Abstract

The extent of base pairing in Escherichia coli and Bacillus stearothermophilus 5S RNAs was determined by infrared spectroscopy. From the infrared spectra taken at 20 degrees and 52 degrees C it is concluded that E. coli and B. stearothermophlius 5S RNAs possess a large number of base pairs (Table I). Comparison of our results with those previously published using other methods leads to the conclusion that the structures of prokaryotic 5S RNAs involve a large number of tertiary interactions, in which the base pairing is not necessarily solely of the Watson-Crick type.

Entities: Gene Species

Mesh：

Substances：
RNA, Bacterial

Year: 1979 PMID： 388350 PMCID： PMC342281 DOI： 10.1093/nar/7.4.1043

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

28 in total

1. Determination of the base-pairing content of four specific tRNAs by infrared spectroscopy.

Authors: U Schernau; T Ackermann
Journal: Biopolymers Date: 1977-08 Impact factor: 2.505

2. Nuclear-spin-labeled nucleic acids. 1 19F nuclear magnetic resonance of Escherchia coli 5-fluorouracil-5S-RNA.

Authors: A G Marshall; J L Smith
Journal: J Am Chem Soc Date: 1977-01-19 Impact factor: 15.419

3. Laser Raman evidence for new cloverleaf secondary structures for eukaryotic 5.8S RNA and prokaryotic 5S RNA.

Authors: G A Luoma; A G Marshall
Journal: Proc Natl Acad Sci U S A Date: 1978-10 Impact factor: 11.205

4. Identification of the single-strand regions in Escherichia coli 5S RNA, native and A forms, by the binding of oligonucleotides.

Authors: J B Lewis; P Doty
Journal: Biochemistry Date: 1977-11-15 Impact factor: 3.162

5. Binding oligonucleotides to Escherichia coli and Bacillus stearothermophilus 5 S RNA.

Authors: P Wrede; O Pongs; V A Erdmann
Journal: J Mol Biol Date: 1978-03-25 Impact factor: 5.469

6. Evolutionary change in 5S RNA secondary structure and a phylogenic tree of 54 5S RNA species.

Authors: H Hori; S Osawa
Journal: Proc Natl Acad Sci U S A Date: 1979-01 Impact factor: 11.205

7. Does 5S RNA function by a switch between two secondary structures?

Authors: H Weidner; R Yuan; D M Crothers
Journal: Nature Date: 1977-03-10 Impact factor: 49.962

Review 8. Structure and function of 5S and 5.8 S RNA.

Authors: V A Erdmann
Journal: Prog Nucleic Acid Res Mol Biol Date: 1976

9. Collection of published 5S and 5.8S RNA sequences and their precursors.

Authors: V A Erdmann
Journal: Nucleic Acids Res Date: 1979-01 Impact factor: 16.971

10. Raman spectra of ten aqueous transfer RNAs and 5S RNA. Conformational comparison with yeast phenylalanine transfer RNA.

Authors: M C Chen; R Giegé; R C Lord; A Rich
Journal: Biochemistry Date: 1978-07-25 Impact factor: 3.162

8 in total

1. Does 5S RNA from E. coli have a pseudoknotted structure?

Authors: H U Göringer; R Wagner
Journal: Nucleic Acids Res Date: 1986-09-25 Impact factor: 16.971

2. A proton-coupled conformational switch of Escherichia coli 5S ribosomal RNA.

Authors: T H Kao; D M Crothers
Journal: Proc Natl Acad Sci U S A Date: 1980-06 Impact factor: 11.205

3. A unique secondary folding pattern for 5S RNA corresponds to the lowest energy homologous secondary structure in 17 different prokaryotes.

Authors: G M Studnicka; F A Eiserling; J A Lake
Journal: Nucleic Acids Res Date: 1981-04-24 Impact factor: 16.971

4. RNA structure analysis using T2 ribonuclease: detection of pH and metal ion induced conformational changes in yeast tRNAPhe.

Authors: C P Vary; J N Vournakis
Journal: Nucleic Acids Res Date: 1984-09-11 Impact factor: 16.971