Literature DB >> 1420873

Folding kinetics of designer proteins. Application of the diffusion-collision model to a de novo designed four-helix bundle.

K K Yapa1, D L Weaver.   

Abstract

A folding algorithm is described, based on the diffusion-collision model, combining static and dynamic calculational methods. The algorithm is applied to predict the basic structure and schematic folding pathways of an artificial four-helix bundle.

Mesh：

Substances：

Year:  1992        PMID： 1420873      PMCID： PMC1262147          DOI： 10.1016/S0006-3495(92)81593-X

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


  20 in total

Review 1.  Beta-sheet coil transitions in a simple polypeptide model.

Authors:  K Yapa; D L Weaver; M Karplus
Journal:  Proteins       Date:  1992-03

2.  De novo design, expression, and characterization of Felix: a four-helix bundle protein of native-like sequence.

Authors:  M H Hecht; J S Richardson; D C Richardson; R C Ogden
Journal:  Science       Date:  1990-08-24       Impact factor: 47.728

3.  Implications of thermodynamics of protein folding for evolution of primary sequences.

Authors:  E I Shakhnovich; A M Gutin
Journal:  Nature       Date:  1990-08-23       Impact factor: 49.962

4.  Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures.

Authors:  M J Sutcliffe; I Haneef; D Carney; T L Blundell
Journal:  Protein Eng       Date:  1987 Oct-Nov

5.  A possible three-dimensional structure of bovine alpha-lactalbumin based on that of hen's egg-white lysozyme.

Authors:  W J Browne; A C North; D C Phillips; K Brew; T C Vanaman; R L Hill
Journal:  J Mol Biol       Date:  1969-05-28       Impact factor: 5.469

6.  Alternative pathways in diffusion-collision controlled protein folding.

Authors:  D L Weaver
Journal:  Biopolymers       Date:  1984-04       Impact factor: 2.505

7.  Diffusion-collision model for the folding kinetics of the lambda-repressor operator-binding domain.

Authors:  D Bashford; D L Weaver; M Karplus
Journal:  J Biomol Struct Dyn       Date:  1984-03

8.  Packing of alpha-helices: geometrical constraints and contact areas.

Authors:  T J Richmond; F M Richards
Journal:  J Mol Biol       Date:  1978-03-15       Impact factor: 5.469

9.  How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins.

Authors:  A M Lesk; C Chothia
Journal:  J Mol Biol       Date:  1980-01-25       Impact factor: 5.469

10.  Relaxin has conformational homology with insulin.

Authors:  S Bedarkar; W G Turnell; T L Blundell; C Schwabe
Journal:  Nature       Date:  1977-12-01       Impact factor: 49.962
View more
  2 in total

1.  Diffusion-collision model study of misfolding in a four-helix bundle protein.

Authors:  C Beck; X Siemens; D L Weaver
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  Brownian dynamics simulations of protein folding: access to milliseconds time scale and beyond.

Authors:  A Rojnuckarin; S Kim; S Subramaniam
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-14       Impact factor: 11.205
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.