Literature DB >> 3856851

Structure of proteins with single-site mutations: a minimum perturbation approach.

H H Shih, J Brady, M Karplus.   

Abstract

A large number of mutant proteins with single amino acid substitutions are now being produced. The ability to predict the structural changes expected from such mutations would aid greatly in the efficient utilization of the mutagenic techniques and in the interpretation of the changes in stability and function that result. A minimum perturbation approach is suggested as a first step in such structural predictions and is tested by application to a recently isolated variant of the hemagglutinin glycoprotein. The agreement between the predicted structure and that inferred from the x-ray refinement is encouraging and provides support for the proposed modeling procedure.

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Year:  1985        PMID: 3856851      PMCID: PMC397339          DOI: 10.1073/pnas.82.6.1697

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  12 in total

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Authors:  G Némethy; H A Scheraga
Journal:  Q Rev Biophys       Date:  1977-08       Impact factor: 5.318

2.  Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation.

Authors:  D C Wiley; I A Wilson; J J Skehel
Journal:  Nature       Date:  1981-01-29       Impact factor: 49.962

3.  Mutations in lambda repressor's amino-terminal domain: implications for protein stability and DNA binding.

Authors:  M H Hecht; H C Nelson; R T Sauer
Journal:  Proc Natl Acad Sci U S A       Date:  1983-05       Impact factor: 11.205

4.  An analysis of incorrectly folded protein models. Implications for structure predictions.

Authors:  J Novotný; R Bruccoleri; M Karplus
Journal:  J Mol Biol       Date:  1984-08-25       Impact factor: 5.469

5.  Thermodynamic stability and point mutations of bacteriophage T4 lysozyme.

Authors:  R Hawkes; M G Grutter; J Schellman
Journal:  J Mol Biol       Date:  1984-05-15       Impact factor: 5.469

6.  Side-chain torsional potentials: effect of dipeptide, protein, and solvent environment.

Authors:  B R Gelin; M Karplus
Journal:  Biochemistry       Date:  1979-04-03       Impact factor: 3.162

7.  Molecular basis of thermostability in the lysozyme from bacteriophage T4.

Authors:  M G Grütter; R B Hawkes; B W Matthews
Journal:  Nature       Date:  1979-02-22       Impact factor: 49.962

8.  Conformation of amino acid side-chains in proteins.

Authors:  J Janin; S Wodak
Journal:  J Mol Biol       Date:  1978-11-05       Impact factor: 5.469

9.  Model of a specific interaction. Salt-bridges form between prothrombin and its activating enzyme blood clotting factor Xa.

Authors:  J Greer
Journal:  J Mol Biol       Date:  1981-12-25       Impact factor: 5.469

10.  Protein engineering.

Authors:  K M Ulmer
Journal:  Science       Date:  1983-02-11       Impact factor: 47.728

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  6 in total

1.  Acidophilic adaptation of family 11 endo-beta-1,4-xylanases: modeling and mutational analysis.

Authors:  Frédéric de Lemos Esteves; Virginie Ruelle; Josette Lamotte-Brasseur; Birgit Quinting; Jean-Marie Frère
Journal:  Protein Sci       Date:  2004-05       Impact factor: 6.725

2.  Protein-Protein Interactions in DNA Recognition: H-NMR Studies of Lambda cI Repressors Genetically Altered by Site-Directed Mutagenesis.

Authors:  M A Weiss; R Stearman; A Jeitler-Nilsson; M Karplus; R T Sauer
Journal:  Biophys J       Date:  1986-01       Impact factor: 4.033

3.  Assignment of side-chain conformation using adiabatic energy mapping, free energy perturbation, and molecular dynamic simulations.

Authors:  T M Frimurer; G H Peters; M D Sørensen; J J Led; O H Olsen
Journal:  Protein Sci       Date:  1999-01       Impact factor: 6.725

4.  Modulation of antibody affinity by a non-contact residue.

Authors:  J F Schillbach; R I Near; R E Bruccoleri; E Haber; P D Jeffrey; J Novotny; S Sheriff; M N Margolies
Journal:  Protein Sci       Date:  1993-02       Impact factor: 6.725

5.  A statistical analysis of side-chain conformations in proteins: comparison with ECEPP predictions.

Authors:  A Nayeem; H A Scheraga
Journal:  J Protein Chem       Date:  1994-04

6.  Evidence from a mutant beta-lactamase for the mechanism of beta-lactamase-catalysed depsipeptide aminolysis.

Authors:  L J Mazzella; S Pazhanisamy; R F Pratt
Journal:  Biochem J       Date:  1991-03-15       Impact factor: 3.857

  6 in total

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