Literature DB >> 3793719

Nucleotide sequence of the 2,3-dihydroxybiphenyl dioxygenase gene of Pseudomonas pseudoalcaligenes.

K Furukawa, N Arimura, T Miyazaki.   

Abstract

2,3-Dihydroxybiphenyl dioxygenase, which catalyzes ring metacleavage of 2,3-dihydroxybiphenyl, is encoded by the bphC gene of Pseudomonas pseudoalcaligenes KF707 (K. Furukawa and T. Miyazaki, J. Bacteriol. 166:392-398, 1986). We determined the nucleotide sequence of a DNA fragment of 2,040 base pairs which included the bphC gene. The fragment included one open reading frame of 912 base pairs to accommodate the enzyme. The predicted processed amino acid sequence of the enzyme subunit consisted of 302 residues, and its 12 NH2-terminal residues were in perfect agreement with those determined for the enzyme. Approximately 10 base pairs upstream from the initiation codon for 2,3-dihydroxybiphenyl dioxygenase, there was a base sequence complementary to the 3' end of the 16S rRNA from Pseudomonas aeruginosa. There was no promoterlike sequence in the region upstream of the bphC gene, but another long open reading frame was present. A putative bphD gene encoding a metacleavage compound-hydrolyzing enzyme was suggested in the region downstream of the bphC gene.

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Year:  1987        PMID: 3793719      PMCID: PMC211787          DOI: 10.1128/jb.169.1.427-429.1987

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  23 in total

1.  A rapid alkaline extraction procedure for screening recombinant plasmid DNA.

Authors:  H C Birnboim; J Doly
Journal:  Nucleic Acids Res       Date:  1979-11-24       Impact factor: 16.971

2.  Metapyrocatechase. II. The role of iron and sulfhydryl groups.

Authors:  M Nozaki; K Ono; T Nakazawa; S Kotani; O Hayaishi
Journal:  J Biol Chem       Date:  1968-05-25       Impact factor: 5.157

Review 3.  Translational initiation in prokaryotes.

Authors:  L Gold; D Pribnow; T Schneider; S Shinedling; B S Singer; G Stormo
Journal:  Annu Rev Microbiol       Date:  1981       Impact factor: 15.500

4.  The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.

Authors:  J Vieira; J Messing
Journal:  Gene       Date:  1982-10       Impact factor: 3.688

5.  "Nonrandom" DNA sequence analysis in bacteriophage M13 by the dideoxy chain-termination method.

Authors:  M Poncz; D Solowiejczyk; M Ballantine; E Schwartz; S Surrey
Journal:  Proc Natl Acad Sci U S A       Date:  1982-07       Impact factor: 11.205

6.  Purification, subunit structure, and partial amino acid sequence of metapyrocatechase.

Authors:  C Nakai; K Hori; H Kagamiyama; T Nakazawa; M Nozaki
Journal:  J Biol Chem       Date:  1983-03-10       Impact factor: 5.157

7.  A simple method for displaying the hydropathic character of a protein.

Authors:  J Kyte; R F Doolittle
Journal:  J Mol Biol       Date:  1982-05-05       Impact factor: 5.469

8.  Complete nucleotide sequence of the metapyrocatechase gene on the TOI plasmid of Pseudomonas putida mt-2.

Authors:  C Nakai; H Kagamiyama; M Nozaki; T Nakazawa; S Inouye; Y Ebina; A Nakazawa
Journal:  J Biol Chem       Date:  1983-03-10       Impact factor: 5.157

9.  [Ischemic cerebral symptoms after subarachnoid hemorrhage due to aneurysmal rupture (author's transl)].

Authors:  M Kutsuna; K Someda; K Morita; Y Yamanouchi; T Kurimoto; Y Kawamura; H Matsumura
Journal:  No Shinkei Geka       Date:  1978-06

10.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

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  29 in total

Review 1.  Molecular mechanisms of genetic adaptation to xenobiotic compounds.

Authors:  J R van der Meer; W M de Vos; S Harayama; A J Zehnder
Journal:  Microbiol Rev       Date:  1992-12

2.  Nucleotide sequence of the metapyrocatechase II (catechol 2,3-oxygenase II) gene mpcII from Alcaligenes eutrophus JMP 222.

Authors:  M Kabisch; P Fortnagel
Journal:  Nucleic Acids Res       Date:  1990-09-25       Impact factor: 16.971

3.  Pseudomonas putida KF715 bphABCD operon encoding biphenyl and polychlorinated biphenyl degradation: cloning, analysis, and expression in soil bacteria.

Authors:  N Hayase; K Taira; K Furukawa
Journal:  J Bacteriol       Date:  1990-02       Impact factor: 3.490

4.  Sequence similarity between Pseudomonas dihydrodiol dehydrogenase, part of the gene cluster that metabolizes polychlorinated biphenyls, and dehydrogenases involved in metabolism of ribitol and glucitol and synthesis of antibiotics and 17 beta-oestradiol, testosterone and corticosterone.

Authors:  M E Baker
Journal:  Biochem J       Date:  1990-05-01       Impact factor: 3.857

5.  Molecular Mechanism and Genetic Determinants of Buprofezin Degradation.

Authors:  Xueting Chen; Junbin Ji; Leizhen Zhao; Jiguo Qiu; Chen Dai; Weiwu Wang; Jian He; Jiandong Jiang; Qing Hong; Xin Yan
Journal:  Appl Environ Microbiol       Date:  2017-08-31       Impact factor: 4.792

6.  Recombination of the bph (Biphenyl) Catabolic Genes from Plasmid pWW100 and Their Deletion during Growth on Benzoate.

Authors:  G Lloyd-Jones; C de Jong; R C Ogden; W A Duetz; P A Williams
Journal:  Appl Environ Microbiol       Date:  1994-02       Impact factor: 4.792

7.  Purification of 2,3-dihydroxybiphenyl 1,2-dioxygenase from Pseudomonas putida OU83 and characterization of the gene (bphC).

Authors:  A A Khan; R F Wang; M S Nawaz; W W Cao; C E Cerniglia
Journal:  Appl Environ Microbiol       Date:  1996-05       Impact factor: 4.792

8.  Novel organization of the genes for phthalate degradation from Burkholderia cepacia DBO1.

Authors:  H K Chang; G J Zylstra
Journal:  J Bacteriol       Date:  1998-12       Impact factor: 3.490

9.  Molecular cloning of the protocatechuate 4,5-dioxygenase genes of Pseudomonas paucimobilis.

Authors:  Y Noda; S Nishikawa; K Shiozuka; H Kadokura; H Nakajima; K Yoda; Y Katayama; N Morohoshi; T Haraguchi; M Yamasaki
Journal:  J Bacteriol       Date:  1990-05       Impact factor: 3.490

10.  Drosophila fat body protein P6 and alcohol dehydrogenase are derived from a common ancestral protein.

Authors:  L Rat; M Veuille; J A Lepesant
Journal:  J Mol Evol       Date:  1991-08       Impact factor: 2.395

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