Literature DB >> 3787504

Partition structures, Polya urns, the Ewens sampling formula, and the ages of alleles.

P Donnelly.   

Abstract

It has recently been shown that the Ewens sampling formula may be generated by a Polya-like urn model. A genealogical proof of this result equates the labelling of balls in the urn to the partition by age of alleles in the sample. This urn construction is shown to be equivalent to the construction of Kingman (Proc. Roy. Soc. London Ser. A 361 (1978), 1-20) using a Poisson-Dirichlet "paintbox" and as a consequence, the partition by ages is seen to be equivalent to the size biased permutation of the Poisson-Dirichlet distribution. This approach unifies and extends many results on ages of alleles, the Polya urn, and the Poisson-Dirichlet distribution. Furthermore the Ewens sampling formula is characterized as being the only partition structure which may be generated by an urn-like mechanism.

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Year:  1986        PMID: 3787504     DOI: 10.1016/0040-5809(86)90037-7

Source DB:  PubMed          Journal:  Theor Popul Biol        ISSN: 0040-5809            Impact factor:   1.570


  12 in total

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2.  Haplotype fine mapping by evolutionary trees.

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3.  Likelihoods and simulation methods for a class of nonneutral population genetics models.

Authors:  P Donnelly; M Nordborg; P Joyce
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4.  An accurate model for genetic hitchhiking.

Authors:  Anders Eriksson; Pontus Fernström; Bernhard Mehlig; Serik Sagitov
Journal:  Genetics       Date:  2008-01       Impact factor: 4.562

5.  Convergence time to the Ewens sampling formula in the infinite alleles Moran model.

Authors:  Joseph C Watkins
Journal:  J Math Biol       Date:  2009-03-15       Impact factor: 2.259

Review 6.  The coupon collector urn model with unequal probabilities in ecology and evolution.

Authors:  N Zoroa; E Lesigne; M J Fernández-Sáez; P Zoroa; J Casas
Journal:  J R Soc Interface       Date:  2017-02       Impact factor: 4.118

7.  Is knowing the age-order of alleles in a sample useful in testing for selective neutrality?

Authors:  S Tavaré; W J Ewens; P Joyce
Journal:  Genetics       Date:  1989-07       Impact factor: 4.562

8.  The population genealogy of the infinitely--many neutral alleles model.

Authors:  P Donnelly; S Tavaré
Journal:  J Math Biol       Date:  1987       Impact factor: 2.259

9.  The birth process with immigration, and the genealogical structure of large populations.

Authors:  S Tavaré
Journal:  J Math Biol       Date:  1987       Impact factor: 2.259

10.  Site frequency spectra from genomic SNP surveys.

Authors:  Ganeshkumar Ganapathy; Marcy K Uyenoyama
Journal:  Theor Popul Biol       Date:  2009-04-14       Impact factor: 1.570

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