Literature DB >> 3753771

PEPPLOT, a protein secondary structure analysis program for the UWGCG sequence analysis software package.

M Gribskov, R R Burgess, J Devereux.   

Abstract

We describe a program for the analysis of protein secondary structure that operates with the Sequence Analysis Software Package of the University of Wisconsin Genetics Computer Group (UWGCG). The program produces both graphic and printed output. Structure prediction using the Chou and Fasman and Robson et al methods, and hydropathy analysis by the method of Kyte and Doolittle are included along with a simplified method of hydrophobic moment analysis. The power of the program is the coordinated presentation of many different kinds of structural information on the same plot.

Mesh：

Year:  1986        PMID： 3753771      PMCID： PMC339416          DOI： 10.1093/nar/14.1.327

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  8 in total

Review 1.  Prediction of the secondary structure of proteins from their amino acid sequence.

Authors:  P Y Chou; G D Fasman
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  1978

2.  Prediction of protein antigenic determinants from amino acid sequences.

Authors:  T P Hopp; K R Woods
Journal:  Proc Natl Acad Sci U S A       Date:  1981-06       Impact factor: 11.205

3.  Correlation between segmental mobility and the location of antigenic determinants in proteins.

Authors:  E Westhof; D Altschuh; D Moras; A C Bloomer; A Mondragon; A Klug; M H Van Regenmortel
Journal:  Nature       Date:  1984 Sep 13-19       Impact factor: 49.962

4.  A comprehensive set of sequence analysis programs for the VAX.

Authors:  J Devereux; P Haeberli; O Smithies
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

5.  The helical hydrophobic moment: a measure of the amphiphilicity of a helix.

Authors:  D Eisenberg; R M Weiss; T C Terwilliger
Journal:  Nature       Date:  1982-09-23       Impact factor: 49.962

6.  A simple method for displaying the hydropathic character of a protein.

Authors:  J Kyte; R F Doolittle
Journal:  J Mol Biol       Date:  1982-05-05       Impact factor: 5.469

7.  Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins.

Authors:  J Garnier; D J Osguthorpe; B Robson
Journal:  J Mol Biol       Date:  1978-03-25       Impact factor: 5.469

8.  The hydrophobic moment detects periodicity in protein hydrophobicity.

Authors:  D Eisenberg; R M Weiss; T C Terwilliger
Journal:  Proc Natl Acad Sci U S A       Date:  1984-01       Impact factor: 11.205
  8 in total
  18 in total

1.  Molecular characterization and differential expression of beta-1,3-glucanase during ripening in banana fruit in response to ethylene, auxin, ABA, wounding, cold and light-dark cycles.

Authors:  Swarup Roy Choudhury; Sujit Roy; Sanjay Kumar Singh; Dibyendu N Sengupta
Journal:  Plant Cell Rep       Date:  2010-05-14       Impact factor: 4.570

2.  Retroviral integrase domains: DNA binding and the recognition of LTR sequences.

Authors:  E Khan; J P Mack; R A Katz; J Kulkosky; A M Skalka
Journal:  Nucleic Acids Res       Date:  1991-02-25       Impact factor: 16.971

3.  Editing of human alpha-galactosidase RNA resulting in a pyrimidine to purine conversion.

Authors:  F J Novo; A Kruszewski; K D MacDermot; G Goldspink; D C Górecki
Journal:  Nucleic Acids Res       Date:  1995-07-25       Impact factor: 16.971

4.  Sigma factors from E. coli, B. subtilis, phage SP01, and phage T4 are homologous proteins.

Authors:  M Gribskov; R R Burgess
Journal:  Nucleic Acids Res       Date:  1986-08-26       Impact factor: 16.971

5.  Characterization of a thrombomodulin cDNA reveals structural similarity to the low density lipoprotein receptor.

Authors:  R W Jackman; D L Beeler; L VanDeWater; R D Rosenberg
Journal:  Proc Natl Acad Sci U S A       Date:  1986-12       Impact factor: 11.205

6.  The pseudorabies virus UL51 gene product is a 30-kilodalton virion component.

Authors:  M Lenk; N Visser; T C Mettenleiter
Journal:  J Virol       Date:  1997-07       Impact factor: 5.103

7.  Identification of a female-sterile mutation affecting yolk protein 2 in Drosophila melanogaster.

Authors:  J L Williams; R D Saunders; M Bownes; A Scott
Journal:  Mol Gen Genet       Date:  1987-09

8.  An insight into the sequential, structural and phylogenetic properties of banana 1-aminocyclopropane-1-carboxylate synthase 1 and study of its interaction with pyridoxal-5'-phosphate and aminoethoxyvinylglycine.

Authors:  Swarup Roy Choudhury; Sanjay Kumar Singh; Sujit Roy; Dibyendu N Sengupta
Journal:  J Biosci       Date:  2010-06       Impact factor: 1.826

9.  The complete amino acid sequence of bovine antithrombin (ATIII).

Authors:  H Mejdoub; M Le Ret; Y Boulanger; M Maman; J Choay; J Reinbolt
Journal:  J Protein Chem       Date:  1991-04

10.  Molecular analysis of two cytochrome P450 monooxygenase genes required for paxilline biosynthesis in Penicillium paxilli, and effects of paxilline intermediates on mammalian maxi-K ion channels.

Authors:  L K McMillan; R L Carr; C A Young; J W Astin; R G T Lowe; E J Parker; G B Jameson; S C Finch; C O Miles; O B McManus; W A Schmalhofer; M L Garcia; G J Kaczorowski; M Goetz; J S Tkacz; B Scott
Journal:  Mol Genet Genomics       Date:  2003-07-18       Impact factor: 3.291
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