Literature DB >> 3703678

A study of the thermal stability of the Z form of (m5dC-dG)3 by resonance Raman spectroscopy.

A Laigle, L Chinsky, P Y Turpin, B Hartmann, N T Thuong, M Leng.   

Abstract

The thermal stability of the hexanucleoside pentaphosphate m5dCpdGpm5dCpdGpm5 dCpdG has been studied by resonance Raman spectroscopy with 257 nm excitation wavelength. At low temperature and in 3M NaClO4, the Raman spectrum resembles that of poly(dG-dC).poly(dG-dC) in the Z conformation. As the temperature is increased, the position and the intensity of several bands (1312 cm-1, 1482 cm-1, 1584 cm-1 and 1632 cm-1) are modified. The variation of intensity versus temperature is biphasic. Analysis of the results suggests that the increase of temperature induces first a transition from the Z form to an intermediate stable form which then melts. These results and those previously obtained by circular dichroism and 31P nuclear magnetic resonance suggest that the intermediate form belongs to the left family but with changes in the stacking of the bases and the geometry of the phosphate groups as compared to the canonical Z form.

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Year:  1986        PMID: 3703678      PMCID: PMC339782          DOI: 10.1093/nar/14.8.3425

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  18 in total

1.  Structural transitions of deoxyribonucleic acid in aqueous electrolyte solutions. I. Reference spectra of conformational limits.

Authors:  S Hanlon; S Brudno; T T Wu; B Wolf
Journal:  Biochemistry       Date:  1975-04-22       Impact factor: 3.162

2.  Condensed form of (dG-dC)n X (dG-dC)n as an intermediate between the B- and Z-type conformations induced by sodium acetate.

Authors:  W Zacharias; J C Martin; R D Wells
Journal:  Biochemistry       Date:  1983-05-10       Impact factor: 3.162

3.  Molecular structure of (m5 dC-dG)3: the role of the methyl group on 5-methyl cytosine in stabilizing Z-DNA.

Authors:  S Fujii; A H Wang; G van der Marel; J H van Boom; A Rich
Journal:  Nucleic Acids Res       Date:  1982-12-11       Impact factor: 16.971

4.  Natural DNA sequences can form left-handed helices in low salt solution under conditions of topological constraint.

Authors:  S Brahms; J Vergne; J G Brahms; E Di Capua; P Bucher; T Koller
Journal:  J Mol Biol       Date:  1982-12-05       Impact factor: 5.469

5.  1H NMR and circular dichroism studies of the B and Z conformations of the self-complementary deoxyhexanucleotide d(m5C-G-C-G-m5-C-G): mechanism of the Z-B-coil transitions.

Authors:  S Tran-Dinh; J Taboury; J M Neumann; T Huynh-Dinh; B Genissel; B Langlois d'Estaintot; J Igolen
Journal:  Biochemistry       Date:  1984-03-27       Impact factor: 3.162

6.  A one- and two-dimensional NMR study of the B to Z transition of (m5dC-dG)3 in methanolic solution.

Authors:  J Feigon; A H Wang; G A van der Marel; J H Van Boom; A Rich
Journal:  Nucleic Acids Res       Date:  1984-01-25       Impact factor: 16.971

7.  Characterization of DNA structures by Raman spectroscopy: high-salt and low-salt forms of double helical poly(dG-dC) in H2O and D2O solutions and application to B, Z and A-DNA.

Authors:  J M Benevides; G J Thomas
Journal:  Nucleic Acids Res       Date:  1983-08-25       Impact factor: 16.971

8.  Spectroscopic studies of (m5dC-dG)3: thermal stability of B- and Z-forms.

Authors:  B Hartmann; N T Thuong; J Pouyet; M Ptak; M Leng
Journal:  Nucleic Acids Res       Date:  1983-07-11       Impact factor: 16.971

9.  The high salt form of poly(dG-dC).poly(dG-dC) is left-handed Z-DNA: Raman spectra of crystals and solutions.

Authors:  T J Thamann; R C Lord; A H Wang; A Rich
Journal:  Nucleic Acids Res       Date:  1981-10-24       Impact factor: 16.971

10.  Synthesis and structural studies of a self-complementary decadeoxynucleotide d(AATTGCAATT). I.-Synthesis and chemical characterization of the decanucleotide.

Authors:  N T Thuong; M Chassignol; G Lancelot; R Mayer; B Hartmann; M Leng; C Hélène
Journal:  Biochimie       Date:  1981-10       Impact factor: 4.079

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  1 in total

1.  Comparison of the reactivity of B-DNA and Z-DNA with two isosteric chemical carcinogens: 2-N,N-acetoxyacetylaminofluorene and 3-N,N-acetoxyacetylamino-4,6-dimethyldipyrido-[1,2-a:3',2' -d] imidazole.

Authors:  L Marrot; E Hebert; G Saint-Ruf; M Leng
Journal:  Nucleic Acids Res       Date:  1987-07-24       Impact factor: 16.971

  1 in total

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