Literature DB >> 36269526

Use of a supervised machine learning model to predict Oncotype DX risk category in node-positive patients older than 50 years of age.

Austin D Williams1, Kate R Pawloski1, Hannah Y Wen2, Varadan Sevilimedu3, Donna Thompson2, Monica Morrow1, Mahmoud El-Tamer4.   

Abstract

PURPOSE: The use of the Oncotype DX recurrence score (RS) to predict chemotherapy benefit in patients with hormone receptor-positive/HER2 negative (HR+/HER2-) breast cancer has recently expanded to include postmenopausal patients with N1 disease. RS availability is limited in resource-poor settings, however, prompting the development of statistical models that predict RS using clinicopathologic features. We sought to assess the performance of our supervised machine learning model in a cohort of patients > 50 years of age with N1 disease.
METHODS: We identified patients > 50 years of age with pT1-2N1 HR+/HER2- breast cancer and applied the statistical model previously developed in a node-negative cohort, which uses age, pathologic tumor size, histology, progesterone receptor expression, lymphovascular invasion, and tumor grade to predict RS. We measured the model's ability to predict RS risk category (low: RS ≤ 25; high: RS > 25).
RESULTS: Our cohort included 401 patients, 60.6% of whom had macrometastases, with a median of 1 positive node. The majority of patients had a low-risk observed RS (85.8%). For predicting RS category, the model had specificity of 97.3%, sensitivity of 31.8%, a negative predictive value of 87.9%, and a positive predictive value of 70.0%.
CONCLUSION: Our model, developed in a cohort of node-negative patients, was highly specific for identifying cN1 patients > 50 years of age with a low RS who could safely avoid chemotherapy. The use of this model for identifying patients in whom genomic testing is unnecessary would help decrease the cost burden in resource-poor settings as reliance on RS for adjuvant treatment recommendations increases.
© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Breast cancer; Machine learning; Node positive; Recurrence score; Risk prediction

Year:  2022        PMID: 36269526     DOI: 10.1007/s10549-022-06763-5

Source DB:  PubMed          Journal:  Breast Cancer Res Treat        ISSN: 0167-6806            Impact factor:   4.624


  22 in total

1.  Gene expression and benefit of chemotherapy in women with node-negative, estrogen receptor-positive breast cancer.

Authors:  Soonmyung Paik; Gong Tang; Steven Shak; Chungyeul Kim; Joffre Baker; Wanseop Kim; Maureen Cronin; Frederick L Baehner; Drew Watson; John Bryant; Joseph P Costantino; Charles E Geyer; D Lawrence Wickerham; Norman Wolmark
Journal:  J Clin Oncol       Date:  2006-05-23       Impact factor: 44.544

2.  Racial disparities in omission of oncotype DX but no racial disparities in chemotherapy receipt following completed oncotype DX test results.

Authors:  David J Press; Abiola Ibraheem; M Eileen Dolan; Kathleen H Goss; Suzanne Conzen; Dezheng Huo
Journal:  Breast Cancer Res Treat       Date:  2017-11-27       Impact factor: 4.872

3.  21-Gene recurrence scores: racial differences in testing, scores, treatment, and outcome.

Authors:  Mary Jo Lund; Marina Mosunjac; Kelly M Davis; Sheryl Gabram-Mendola; Monica Rizzo; Harvey L Bumpers; Sherita Hearn; Amelia Zelnak; Toncred Styblo; Ruth M O'Regan
Journal:  Cancer       Date:  2011-06-30       Impact factor: 6.860

4.  A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer.

Authors:  Soonmyung Paik; Steven Shak; Gong Tang; Chungyeul Kim; Joffre Baker; Maureen Cronin; Frederick L Baehner; Michael G Walker; Drew Watson; Taesung Park; William Hiller; Edwin R Fisher; D Lawrence Wickerham; John Bryant; Norman Wolmark
Journal:  N Engl J Med       Date:  2004-12-10       Impact factor: 91.245

5.  Uptake of the 21-Gene Assay Among Women With Node-Positive, Hormone Receptor-Positive Breast Cancer.

Authors:  Megan C Roberts; Allison W Kurian; Valentina I Petkov
Journal:  J Natl Compr Canc Netw       Date:  2019-06-01       Impact factor: 11.908

6.  Disparities in compliance with the Oncotype DX breast cancer test in the United States: A National Cancer Data Base assessment.

Authors:  Zachary Kozick; Ammar Hashmi; James Dove; Marie Hunsinger; Tania Arora; Jeffrey Wild; Mohsen Shabahang; Joseph Blansfield
Journal:  Am J Surg       Date:  2017-06-14       Impact factor: 2.565

7.  21-Gene Assay to Inform Chemotherapy Benefit in Node-Positive Breast Cancer.

Authors:  Kevin Kalinsky; William E Barlow; Julie R Gralow; Funda Meric-Bernstam; Kathy S Albain; Daniel F Hayes; Nancy U Lin; Edith A Perez; Lori J Goldstein; Stephen K L Chia; Sukhbinder Dhesy-Thind; Priya Rastogi; Emilio Alba; Suzette Delaloge; Miguel Martin; Catherine M Kelly; Manuel Ruiz-Borrego; Miguel Gil-Gil; Claudia H Arce-Salinas; Etienne G C Brain; Eun-Sook Lee; Jean-Yves Pierga; Begoña Bermejo; Manuel Ramos-Vazquez; Kyung-Hae Jung; Jean-Marc Ferrero; Anne F Schott; Steven Shak; Priyanka Sharma; Danika L Lew; Jieling Miao; Debasish Tripathy; Lajos Pusztai; Gabriel N Hortobagyi
Journal:  N Engl J Med       Date:  2021-12-01       Impact factor: 91.245

8.  Supervised machine learning model to predict oncotype DX risk category in patients over age 50.

Authors:  Kate R Pawloski; Mithat Gonen; Hannah Y Wen; Audree B Tadros; Donna Thompson; Kelly Abbate; Monica Morrow; Mahmoud El-Tamer
Journal:  Breast Cancer Res Treat       Date:  2021-11-09       Impact factor: 4.624

9.  Underutilization of gene expression profiling for early-stage breast cancer in California.

Authors:  Rosemary D Cress; Yingjia S Chen; Cyllene R Morris; Helen Chew; Kenneth W Kizer
Journal:  Cancer Causes Control       Date:  2016-04-20       Impact factor: 2.506

10.  Adjuvant Chemotherapy Guided by a 21-Gene Expression Assay in Breast Cancer.

Authors:  Joseph A Sparano; Robert J Gray; Della F Makower; Kathleen I Pritchard; Kathy S Albain; Daniel F Hayes; Charles E Geyer; Elizabeth C Dees; Matthew P Goetz; John A Olson; Tracy Lively; Sunil S Badve; Thomas J Saphner; Lynne I Wagner; Timothy J Whelan; Matthew J Ellis; Soonmyung Paik; William C Wood; Peter M Ravdin; Maccon M Keane; Henry L Gomez Moreno; Pavan S Reddy; Timothy F Goggins; Ingrid A Mayer; Adam M Brufsky; Deborah L Toppmeyer; Virginia G Kaklamani; Jeffrey L Berenberg; Jeffrey Abrams; George W Sledge
Journal:  N Engl J Med       Date:  2018-06-03       Impact factor: 91.245

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