Zhen Tan1,2,3,4,5, Jiang Liu1,2,3,4, Jin Xu1,2,3,4, Bo Zhang1,2,3,4, Xianjun Yu1,2,3,4, Wei Wang6,7,8,9, Chen Liang10,11,12,13. 1. Department of Pancreatic Surgery, Fudan University Shanghai Cancer Center, 270 Dong'An Road, Shanghai, 200032, People's Republic of China. 2. Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, 200032, People's Republic of China. 3. Shanghai Pancreatic Cancer Institute, Shanghai, 200032, People's Republic of China. 4. Pancreatic Cancer Institute, Fudan University, Shanghai, 200032, People's Republic of China. 5. Department of Hepatobiliary Pancreatic Surgery, The Affiliated Hospital of Qingdao University, Qingdao, People's Republic of China. 6. Department of Pancreatic Surgery, Fudan University Shanghai Cancer Center, 270 Dong'An Road, Shanghai, 200032, People's Republic of China. wangwei@fudanpci.org. 7. Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, 200032, People's Republic of China. wangwei@fudanpci.org. 8. Shanghai Pancreatic Cancer Institute, Shanghai, 200032, People's Republic of China. wangwei@fudanpci.org. 9. Pancreatic Cancer Institute, Fudan University, Shanghai, 200032, People's Republic of China. wangwei@fudanpci.org. 10. Department of Pancreatic Surgery, Fudan University Shanghai Cancer Center, 270 Dong'An Road, Shanghai, 200032, People's Republic of China. liangchen@fudanpci.org. 11. Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, 200032, People's Republic of China. liangchen@fudanpci.org. 12. Shanghai Pancreatic Cancer Institute, Shanghai, 200032, People's Republic of China. liangchen@fudanpci.org. 13. Pancreatic Cancer Institute, Fudan University, Shanghai, 200032, People's Republic of China. liangchen@fudanpci.org.
Abstract
PURPOSE: N6-methyladenosine (m6A) is tightly associated with the progression of pancreatic ductal adenocarcinoma (PDAC). Another prominent feature of PDAC is metabolic reprogramming, which provides sufficient nutrients to support rapid cell growth via the tumor microenvironment. However, the underlying influences of m6A-associated metabolic genes on the PDAC microenvironment remain poorly understood. Therefore, we sought to construct a survival prediction model using m6A-related genes to clarify the molecular characteristics of PDAC. METHODS: In the present study, m6A-related metabolic genes were obtained from The Cancer Genome Atlas (TCGA) pancreatic adenocarcinoma dataset and subjected to coexpression analysis. Consensus clustering recognized two distinct subgroups with different immune cell infiltration patterns according to the expression of m6A-associated metabolic genes. Multivariate Cox regression analyses and least absolute shrinkage and selection operator (LASSO) analysis were adopted to create an m6A-related metabolism model. A nomogram including clinical features and the risk score based on the expression of m6A-related metabolism regulators was constructed. RESULTS: A four-gene signature comprising ATP8B2, GMPS, LDHA and SDR39U1 was built to predict the overall survival (OS) of PDAC patients. This signature also robustly predicted survival in two independent validation cohorts from the International Cancer Genome Consortium (ICGC) and ArrayExpress (E-MTAB-6134). The four-gene signature divided patients into high- and low-risk groups with distinct OS values as verified by the log-rank test. Among the four genes, LDHA was upregulated in both PDAC tissues and cell lines. CONCLUSIONS: Collectively, we analyzed the immune microenvironment, predicted drug sensitivity and assessed the implications of the mutation landscape based on the crosstalk between m6A regulators and metabolic rewiring, and we also constructed a novel signature based on m6A-associated metabolic genes to predict PDAC prognosis.
PURPOSE: N6-methyladenosine (m6A) is tightly associated with the progression of pancreatic ductal adenocarcinoma (PDAC). Another prominent feature of PDAC is metabolic reprogramming, which provides sufficient nutrients to support rapid cell growth via the tumor microenvironment. However, the underlying influences of m6A-associated metabolic genes on the PDAC microenvironment remain poorly understood. Therefore, we sought to construct a survival prediction model using m6A-related genes to clarify the molecular characteristics of PDAC. METHODS: In the present study, m6A-related metabolic genes were obtained from The Cancer Genome Atlas (TCGA) pancreatic adenocarcinoma dataset and subjected to coexpression analysis. Consensus clustering recognized two distinct subgroups with different immune cell infiltration patterns according to the expression of m6A-associated metabolic genes. Multivariate Cox regression analyses and least absolute shrinkage and selection operator (LASSO) analysis were adopted to create an m6A-related metabolism model. A nomogram including clinical features and the risk score based on the expression of m6A-related metabolism regulators was constructed. RESULTS: A four-gene signature comprising ATP8B2, GMPS, LDHA and SDR39U1 was built to predict the overall survival (OS) of PDAC patients. This signature also robustly predicted survival in two independent validation cohorts from the International Cancer Genome Consortium (ICGC) and ArrayExpress (E-MTAB-6134). The four-gene signature divided patients into high- and low-risk groups with distinct OS values as verified by the log-rank test. Among the four genes, LDHA was upregulated in both PDAC tissues and cell lines. CONCLUSIONS: Collectively, we analyzed the immune microenvironment, predicted drug sensitivity and assessed the implications of the mutation landscape based on the crosstalk between m6A regulators and metabolic rewiring, and we also constructed a novel signature based on m6A-associated metabolic genes to predict PDAC prognosis.
Authors: Chen Liang; Si Shi; Yi Qin; Qingcai Meng; Jie Hua; Qiangshen Hu; Shunrong Ji; Bo Zhang; Jin Xu; Xian-Jun Yu Journal: Gut Date: 2019-10-14 Impact factor: 23.059