Literature DB >> 36255182

Specialised ribosomes as versatile regulators of gene expression.

Minju Joo1, Ji-Hyun Yeom1, Younkyung Choi1, Hyeon Jun1, Wooseok Song1, Hyun-Lee Kim1, Kangseok Lee1, Eunkyoung Shin1.   

Abstract

The ribosome has long been thought to be a homogeneous cellular machine that constitutively and globally synthesises proteins from mRNA. However, recent studies have revealed that ribosomes are highly heterogeneous, dynamic macromolecular complexes with specialised roles in translational regulation in many organisms across the kingdoms. In this review, we summarise the current understanding of ribosome heterogeneity and the specialised functions of heterogeneous ribosomes. We also discuss specialised translation systems that utilise orthogonal ribosomes.

Entities:  

Keywords:  Specialised ribosome; divergent rRNA; orthogonal ribosome; post-translational modification; ribosomal protein; ribosome heterogeneity

Mesh:

Substances:

Year:  2022        PMID: 36255182      PMCID: PMC9586635          DOI: 10.1080/15476286.2022.2135299

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.766


  149 in total

Review 1.  Does Intraspecific Variation in rDNA Copy Number Affect Analysis of Microbial Communities?

Authors:  Anton Lavrinienko; Toni Jernfors; Janne J Koskimäki; Anna Maria Pirttilä; Phillip C Watts
Journal:  Trends Microbiol       Date:  2020-06-24       Impact factor: 17.079

2.  Global Analysis of the E. coli Toxin MazF Reveals Widespread Cleavage of mRNA and the Inhibition of rRNA Maturation and Ribosome Biogenesis.

Authors:  Peter H Culviner; Michael T Laub
Journal:  Mol Cell       Date:  2018-05-31       Impact factor: 17.970

3.  Proteomic analysis of ribosomes: translational control of mRNA populations by glycogen synthase GYS1.

Authors:  Gabriele Fuchs; Camille Diges; Lori A Kohlstaedt; Karen A Wehner; Peter Sarnow
Journal:  J Mol Biol       Date:  2011-05-05       Impact factor: 5.469

4.  Genetic analysis of the Shine-Dalgarno interaction: selection of alternative functional mRNA-rRNA combinations.

Authors:  K Lee; C A Holland-Staley; P R Cunningham
Journal:  RNA       Date:  1996-12       Impact factor: 4.942

Review 5.  Heterogeneity and specialized functions of translation machinery: from genes to organisms.

Authors:  Naomi R Genuth; Maria Barna
Journal:  Nat Rev Genet       Date:  2018-07       Impact factor: 53.242

6.  Functional specificity among ribosomal proteins regulates gene expression.

Authors:  Suzanne Komili; Natalie G Farny; Frederick P Roth; Pamela A Silver
Journal:  Cell       Date:  2007-11-02       Impact factor: 41.582

7.  The structure of the eukaryotic ribosome at 3.0 Å resolution.

Authors:  Adam Ben-Shem; Nicolas Garreau de Loubresse; Sergey Melnikov; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Science       Date:  2011-11-17       Impact factor: 47.728

8.  Mutagenesis at the mRNA decoding site in the 16S ribosomal RNA using the specialized ribosome system in Escherichia coli.

Authors:  A S Hui; D H Eaton; H A de Boer
Journal:  EMBO J       Date:  1988-12-20       Impact factor: 11.598

9.  Antibiotic resistance evolved via inactivation of a ribosomal RNA methylating enzyme.

Authors:  Vanja Stojković; Lianet Noda-Garcia; Dan S Tawfik; Danica Galonić Fujimori
Journal:  Nucleic Acids Res       Date:  2016-08-05       Impact factor: 16.971

10.  Landscape of the complete RNA chemical modifications in the human 80S ribosome.

Authors:  Masato Taoka; Yuko Nobe; Yuka Yamaki; Ko Sato; Hideaki Ishikawa; Keiichi Izumikawa; Yoshio Yamauchi; Kouji Hirota; Hiroshi Nakayama; Nobuhiro Takahashi; Toshiaki Isobe
Journal:  Nucleic Acids Res       Date:  2018-10-12       Impact factor: 16.971

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