| Literature DB >> 36246667 |
Tridip Sardar1, Sk Shahid Nadim2,3, Sourav Rana4.
Abstract
COVID-19 is a highly infectious disease, and in very recent times, it has shown a massive impact throughout the globe. Several countries faced the COVID-19 infection waves multiple times. These later waves are more aggressive than the first wave and drastically impact social and economic factors. We developed a mechanistic model with imperfect lockdown effect, reinfection, transmission variability between symptomatic & asymptomatic, and media awareness to focus on the early detection of multiple waves and their control measures. Using daily COVID-19 cases data from six states of India, we estimated several important model parameters. Moreover, we estimated the home quarantine, community, and basic reproduction numbers. We developed an algorithm to carry out global sensitivity analysis (Sobol) of the parameters that influence the number of COVID-19 waves ( W C ) and the average number of COVID-19 cases in a wave ( A W ). We have identified some critical controlling parameters that mainly influenced W C and A W . Our study also revealed the best COVID-19 control strategy/strategies among vaccination, media awareness, and their combination using an optimal cost-effective study. The detailed analysis suggests that the severity of asymptomatic transmission is around 10% to 29% of that of symptomatic transmission in all six locations. About 1% to 4% of the total population under lockdown may contribute to new COVID-19 infection in all six locations. Optimal cost-effective analysis based on interventions, namely only vaccination (VA), only media awareness (ME), and a combination of vaccination & media (VA+ME), are projected for the period March 14, 2020, to August 31, 2021, for all the six locations. We have found that a large percentage of the population (26% to 45%) must be vaccinated from February 13 to August 31, 2021, to avert an optimal number of COVID-19 cases in these six locations. Supplementary Information: The online version contains supplementary material available at 10.1007/s11071-022-07887-5.Entities:
Keywords: COVID-19; Estimation; Mathematical model; Multiple waves; Optimization
Year: 2022 PMID: 36246667 PMCID: PMC9540085 DOI: 10.1007/s11071-022-07887-5
Source DB: PubMed Journal: Nonlinear Dyn ISSN: 0924-090X Impact factor: 5.741
Parameters with their respective epidemiological information for the mechanistic ODE model (2.1) for COVID-19
| Parameters | Biological meaning | Value/ranges | References |
|---|---|---|---|
| Total population | Varies over locations | [ | |
| Average life expectancy at birth | Varies over locations | [ | |
| Recruitment rate of human population | Varies over locations | [ | |
| Average transmission rate of a symptomatic COVID-19 infected | [ | ||
| Transmission variability factor between symptomatic and asymptomatic infection | [ | ||
| Awareness response intensity | (0–1) day | [ | |
| Fraction of home-quarantined population who maintain social distancing | [ | ||
| Average incubation period of COVID-19 | 5.1 days | [ | |
| Average fraction of the COVID-19 exposed population that become asymptomatic infected | [ | ||
| Infectious period of asymptomatic cases | 8 days | [ | |
| Infectious period of symptomatic cases | 18.0505 days | [ | |
| Average hospitalization & notification rate for the COVID-19 symptomatic individuals | (0–1) day | [ | |
| Average death rate due to COVID-19 infection | Estimated from COVID-19 data | [ | |
| Average fraction of critical COVID-19 cases that received treatment | 0.1 | [ | |
| Recovery modification factor | [ | ||
| Average lockdown rate | (0–0.9) day | [ | |
| Lockdown period in India | 68 days | [ | |
| Period of natural immunity in COVID-19 | (1–8) months | [ | |
| Awareness growth rate | 0.01 day | [ | |
| Awareness degradation rate | 0.06 day | [ | |
| Rate of vaccination | [ | ||
| Covishield Vaccine efficacy | 0.704 | [ |
**Estimated parameters, *Average COVID-19 death rate , D, C, and are total deaths, total cases and total number of data points, respectively
Fig. 1Flow diagram of the model (2.1)
Fig. 2In A, C and E (fist column) we have plotted daily confirmed cases (C) derived from the model (2.1) and it represents the first wave (A), beginning of the second wave (C) and a complete second wave (E), respectively. In B, D and F (second column) we have plotted and we counted the number of sign changes (red circle) in the time series of . (Colour figure online)
Different cost coefficients
| Cost-coefficients parameters | Biological meaning | Value | References |
|---|---|---|---|
| Cost of productive time lost per premature death due COVID (Calculated with life expectancy 73 years) (in USD) | 15,500 | [ | |
| Average per day cost due to carry the COVID-19 awareness campaign (in USD) | 847.9655 | [ | |
| Two dose of Covishield (in USD) | 10.92 | [ | |
| Quadratic correction term | 10 | [ |
Fig. 3Model (2.1) to the daily COVID-19 cases from six states in India for the time period March 14, 2020, to May 12, 2021. Observed cases are in blue circle, and black line is the model solution. Here, subscripts AP, KA, KL, MH, TN, and WB are Andhra Pradesh, Karnataka, Kerala, Maharashtra, Tamil Nadu, and West Bengal, respectively
Estimated parameters (95% CI) of the mechanistic mathematical model (2.1) for the six locations Andhra Pradesh (AP), Karnataka (KA), Kerala (KL), Maharashtra (MH), Tamil Nadu (TN), and West Bengal (WB), respectively
| AP | KA | KL | MH | TN | WB | |
|---|---|---|---|---|---|---|
| 1.084 (0.9974–1.3954) | 1.4650 (1.3194–1.4834) | 0.6715 (0.4931–1.1352) | 1.0518 (1.0663–1.6046) | 1.3095 (1.2039–1.3540) | 1.1823 (1.2870–2.0554) | |
| 0.1052 (0.1001–0.1204) | 0.1048 (0.1008–0.1554) | 0.1961 (0.1013–0.2872) | 0.1334 (0.1005–0.1661) | 0.1139 (0.1013–0.1518) | 0.1473 (0.1004–0.1850) | |
| 0.9997 (0.9209–0.9998) | 0.9866 (0.9557–0.9996) | 0.6808 (0.5777–0.7202) | 0.7130 (0.4872–0.7716) | 0.9962 (0.9745– 0.9998) | 0.9796 (0.9272–0.9994) | |
| 0.9726 (0.9680–0.9755) | 0.9998 (0.9988–0.9999) | 0.9933 (0.9922–0.9999) | 0.9990 (0.9971–0.9999) | 0.9998 (0.9992–0.9999) | 0.9999 (0.9998–0.9999) | |
| 0.0042 (0.0041–0.0043) | 0.0042 (0.0041–0.0043) | 0.01554 (0.01364–0.01636) | 0.0070 (0.0063–0.0076) | 0.0045 (0.0041–0.0049) | 0.0077 (0.0073–0.0083) | |
| 0.7198 (0.6604–0.7739) | 1.285E−3 (1.04E−3–6.608E−3) | 9.01E−3 (1.41E−3–0.0505) | 0.6927 (0.6904–0.7701) | 3.0E−3 (1.055E−3–0.01033) | 0.7769 (0.7770–0.8256) | |
| 0.1807 (0.1471–0.2810) | 0.9851 (0.88–0.9985) | 0.4093 (0.2594–0.7678) | 0.1889 (0.1486–0.3715) | 0.9657 (0.8806–0.9989) | 0.4197 (0.2680–0.6438) | |
| 0.1966 (0.0043–1.4272) | 0.09133 (0.0048–0.3525) | 0.1722 (0.0086–1.4828) | 0.3499 (0.0052–1.6119) | 0.1834 (0.00194–0.2817) | 0.8481 (0.01485–1.6156) | |
| 0.042 (0.017–0.8782) | 0.7350 (0.0114–0.8244) | 0.8385 (0.05258–0.8942) | 0.7257 (0.0511–0.8824) | 0.3122 (0.012–0.7847) | 0.7437 (0.04406–0.8902) |
Estimated values of the community ( and ), the home-quarantined ( and ), and the basic () reproduction numbers for Andhra Pradesh (AP), Karnataka (KA), Kerala (KL), Maharashtra (MH), Tamil Nadu (TN), and West Bengal (WB). All data are given in the format [Mean(95% CI)]
| Location | |||||
|---|---|---|---|---|---|
| Andhra Pradesh (AP) | 0.4732 (0.2532–0.8075) | 0.2751 (0.0266–0.5260) | 0.7582 (0.4341–1.1918) | 0.4529 (0.0394–0.80) | 1.9595 (1.7876–2.1151) |
| Karnataka (KA) | 0.0036 (0.0013–0.0090) | 1.74E−5 (1.38E−07 - 1.23E−4) | 1.3963 (1.3540–1.4135) | 0.0068 (7.31E−5–0.05196) | 1.4068 (1.3946–1.4186) |
| Kerala(KL) | 0.015 (0.0011–0.05632) | 1.5E−4 (4.44E−7–9.04E−4) | 1.4255 (1.33–1.5286) | 0.0127 (1.6E−4–0.0513) | 1.4534 (1.3697–1.5489) |
| Maharashtra (MH) | 0.8691 (0.6224–1.222) | 0.0236 (3.89E−4–0.0869) | 1.1821 (0.8345–1.466) | 0.0329 (4.79E−4–0.1223) | 2.108 (2.012–2.2194) |
| Tamil Nadu (TN) | 0.0043 (0.0013–0.0129) | 1.74E−5 (7.20E−8–1.13E−4) | 1.2729 (1.2450–1.2854) | 0.0053 (3.0E−5–0.0318) | 1.2827 (1.2754–1.29) |
| West Bengal (WB) | 1.2592 (0.9716–1.6394) | 0.0032 (4.89E−5–0.0127) | 0.7014 (0.4129–0.9546) | 0.0020 (2.58E−5–0.0083) | 1.9658 (1.889–2.08) |
Fig. 4The first-order and total order Sobol sensitivity index of some of the model (2.1) parameters with number COVID-19 waves () during the time period March 14, 2020, to May 12, 2021
Fig. 5The first-order and total order Sobol sensitivity index of some of the model (2.1) parameters with average number COVID-19 cases in a wave () for the time period March 14, 2020, to May 12, 2021
Total number of COVID-19 cases from March 14, 2020, to August 31, 2021, under each intervention scenario at an optimal rate. Base cases indicate the number of COVID-19 cases during March 14, 2020, to August 31, 2021, predicted by the basic COVID-19 model (2.1). Fixed and estimated parameters used in calculating base cases are taken from Table 1 and 3
| Maharashtra (MH) | Kerala (KL) | Tamil Nadu (TN) | |
|---|---|---|---|
| Base cases | 8.31E6 (8.13E6–8.48E6) | 5.53E6 (5.31E6–5.78E6) | 4.41E6 (4.28E6–4.53E6) |
| VA | 2.05E7 (1.84E7–2.41E7) | 1.90E7 (1.84E7–1.95E7) | 3.25E7 (3.17E7–3.36E7) |
| ME | 5.66E6 (4.86E6–6.86E6) | 4.40E6 (4.15E6–4.68E6) | 3.14E6 (2.92E6–3.40E6) |
| VA+ME | 2.65E6 (1.92E6–3.70E6) | 6.92E5 (6.30E5– 7.54E5) | 5.59E6 (4.24E6–6.60E6) |
Costs (in USD) of optimal interventions under different control scenarios (VA, ME, and VA+ME) at different optimal rates. Costs of vaccination (VA) and media awareness (ME) are measured for the time period February 13, 2021, up to August 31, 2021, and March 14, 2020 up to August 31, 2021, respectively
| Maharashtra (MH) | Kerala (KL) | Tamil Nadu (TN) | |
|---|---|---|---|
| VA | 2.13E8 (1.85E8–2.54E8) | 4.01E7 (3.54E7–4.27E7) | 1.24E6 (1.19E6–1.29E6) |
| ME | 5.41E7 (4.61E7–6.68E7) | 8.52E6 (7.42E6–9.38E6) | 2.06E5 (1.92E5–2.14E5) |
| VA+ME | 2.80E7 (2.04E7–4.01E7) | 1.59E6 (1.34E6–1.78E6) | 2.48E5 (1.80E5–2.93E5) |
Estimates of the average optimal rates of vaccination (during February 13, 2021, to August 31, 2021) and the average awareness response intensity (during March 14, 2020, to August 31, 2021) for six locations AP, KA, KL, MH, TN, and WB under three intervention scenarios. Here, VA-vaccination, ME-media, and VA+ME-combination of vaccination & awareness
| Maharashtra (MH) | Kerala (KL) | Tamil Nadu (TN) | |
|---|---|---|---|
| VA ( | 0.1216 (0.1142–0.1290) | 0.088 (0.0798–0.1024) | 0.0092 (0.0076–0.0136) |
| ME ( | 0.7753 (0.7564–0.7973) | 0.6557 (0.6498–0.6621) | 0.4265 (0.4110–0.4361) |
| VA+ME ( | 0.0152 (0.0047–0.049) | 0.0519 (0.0416–0.0620) | 0.0020 (0.0019–0.0023) |
| VA+ME ( | 0.4054 (0.3988–0.4138) | 0.3202 (0.3158–0.3279) | 0.2056 (0.1921–0.2158) |
Estimates of the optimal vaccination coverage during the period February 13, 2021, to August 31, 2021, under two lockdown scenarios (VA and VA+ME) in the locations AP, KA, KL, MH, TN and WB
| Vaccination (VA) only | Combination (VA+ME) | |
|---|---|---|
| Maharashtra (MH) | 44.24% (43.25–45.16%) | 35.38% (30.70–42.88%) |
| Kerala (KL) | 31.45% (30.43–33.53%) | 33.45% (31.24–35.95%) |
| Tamil Nadu (TN) | 34.87% (33.56–37.37%) | 26.41% (25.89–27.79%) |
| Andhra Pradesh (AP) | 43.22% (42.33–43.80%) | 38.68% (30.50–44.52%) |
| West Bengal (WB) | 41.31% (40.54–42.12%) | 43.65% (40.52–45.35%) |
| Karnataka (KA) | 41.06% (39.02–42.34%) | 27.10% (25.64–43.89%) |