| Literature DB >> 24312540 |
Tridip Sardar1, Soumalya Mukhopadhyay, Amiya Ranjan Bhowmick, Joydev Chattopadhyay.
Abstract
Incidence of cholera outbreak is a serious issue in underdeveloped and developing countries. In Zimbabwe, after the massive outbreak in 2008-09, cholera cases and deaths are reported every year from some provinces. Substantial number of reported cholera cases in some provinces during and after the epidemic in 2008-09 indicates a plausible presence of seasonality in cholera incidence in those regions. We formulate a compartmental mathematical model with periodic slow-fast transmission rate to study such recurrent occurrences and fitted the model to cumulative cholera cases and deaths for different provinces of Zimbabwe from the beginning of cholera outbreak in 2008-09 to June 2011. Daily and weekly reported cholera incidence data were collected from Zimbabwe epidemiological bulletin, Zimbabwe Daily cholera updates and Office for the Coordination of Humanitarian Affairs Zimbabwe (OCHA, Zimbabwe). For each province, the basic reproduction number ([Formula: see text]) in periodic environment is estimated. To the best of our knowledge, this is probably a pioneering attempt to estimate [Formula: see text] in periodic environment using real-life data set of cholera epidemic for Zimbabwe. Our estimates of [Formula: see text] agree with the previous estimate for some provinces but differ significantly for Bulawayo, Mashonaland West, Manicaland, Matabeleland South and Matabeleland North. Seasonal trend in cholera incidence is observed in Harare, Mashonaland West, Mashonaland East, Manicaland and Matabeleland South. Our result suggests that, slow transmission is a dominating factor for cholera transmission in most of these provinces. Our model projects [Formula: see text] cholera cases and [Formula: see text] cholera deaths during the end of the epidemic in 2008-09 to January 1, 2012. We also determine an optimal cost-effective control strategy among the four government undertaken interventions namely promoting hand-hygiene & clean water distribution, vaccination, treatment and sanitation for each province.Entities:
Mesh:
Year: 2013 PMID: 24312540 PMCID: PMC3849194 DOI: 10.1371/journal.pone.0081231
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Cholera transmission model without any interventions.
Data Summary.
| Province | Start date | End date | Number of data points | References |
| Harare | August 18, 2008 | September 12, 2010 | 48 | First 12 points from |
| Bulawayo | November 14, 2008 | April 25, 2009 | 17 | First 6 points from |
| Mashonaland West | September 21, 2008 | March 27, 2011 | 61 | First 11 points from |
| Mashonaland Central | November 14, 2008 | May 30, 2010 | 34 | First 5 points from |
| Mashonaland East | October 6, 2008 | March 13, 2011 | 36 | First 8 points from |
| Midlands | November 11, 2008 | January 23, 2011 | 39 | First 8 points from |
| Masvingo | November 13, 2008 | June 26, 2011 | 55 | First 5 points from |
| Manicaland | November 1, 2008 | June 12, 2011 | 85 | First 9 points from |
| Matabeleland South | November 13, 2008 | April 4, 2010 | 23 | First 8 points from |
| Matabeleland North | December 25, 2008 | June 20, 2009 | 13 |
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Figure 2Cholera transmission model with different interventions.
Fixed cost-coefficients.
| Notations | Interpretations | Year | Value (US$) | Reference |
| A | Cost of productive time lost per premature death (Calculated with life expectancy 73 years) |
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| B | Cost of oral cholera vaccine (OCV) per fully immunized person |
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| C | Cost of OCV per fully immunized person in high emergencies |
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| D | Cost of medicines and health centre consultation per mild/moderate case |
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| E | Cost of medicines and hospital admission per severe cholera cases |
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| F | Cost of per percent reduction in bacterial ingestion rate by promoting hand-hygiene and water supply |
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| G | Cost of per percent reduction in bacterial ingestion rate by promoting hand-hygiene and water supply in high emergencies |
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| assumed 40% increase in normal cost |
| H | Cost of per percent reduction in human shedding by promoting sanitation (construction and promotion of latrine and drainage system) |
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| K | Cost of per percent reduction in human shedding by promoting sanitation (construction and promotion of latrine and drainage system) in high emergencies |
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| assumed 40% increase in normal cost |
Figure 3Province-wise cumulative cholera cases in Zimbabwe.
The observed data points (available at some discrete time points over a time period, which varies across the study regions) are shown by blue circles while the solid lines depict the model solutions. The cumulative cholera cases from the model are plotted for each day of the time period (from the start to end week for the observed cholera data) using parameter values and initial conditions from . The above plots of cholera cases from the different provinces of Zimbabwe are as follows: (i) Harare; (ii) Bulawayo; (iii) Mashonland West; (iv) Mashonland Central; (v) Mashonland East; (vi) Midlands; (vii) Masvingo; (viii) Manicaland; (ix) Matabalend South; and (x) Matabalend North.
Figure 4Province-wise cumulative cholera-related deaths.
The data points are shown by empty blue circles while the model fits by the solid lines. The plots are given in the same order as of . The cumulative deaths from the model are plotted using parameter values and initial conditions from .
Figure 5Cholera model fitting for the weekly new cholera cases.
The solid line represents the model solution, and blue circles mark the reported cholera cases in the provinces using parameter values and initial conditions from .
Figure 6Cholera model fitting for the weekly new cholera deaths.
The solid line represents the model solution, and blue circles mark the reported cholera deaths in the provinces using parameter values and initial conditions from .
Estimates of , and .
| Zimbabwe province |
| 95% CI | % |
| 95% CI | % |
| 95% CI |
| Harare | 1.2294 | 1.1885–1.2764 | 99.06 | 0.011 | 0.0004–0.04 | 0.94 | 1.2406 | 1.206–1.285 |
| Bulawayo | 0.098 | 0.0212–0.2083 | 95.89 | 0.0042 | 0–0.025 | 4.11 | 0.1022 | 0.0215–0.2382 |
| Mashonaland West | 1.4105 | 1.338–1.4651 | 97.66 | 0.0338 | 0.0017–0.1387 | 2.34 | 1.4443 | 1.4126–1.4782 |
| Mashonaland Central | 0.005 | 0.0044–0.0057 | 0.28 | 1.7701 | 1.7465–1.8015 | 99.72 | 1.775 | 1.7518–1.8063 |
| Mashonaland East | 0.0003 | 0–0.0015 | 0.0163 | 1.8453 | 1.8387–1.8499 | 99.98 | 1.8456 | 1.8397–1.8501 |
| Midlands | 0.0071 | 0.0059–0.0092 | 0.39 | 1.7974 | 1.7844–1.8101 | 99.61 | 1.8045 | 1.7929–1.8161 |
| Manicaland | 1.1146 | 1.031–1.1575 | 97.91 | 0.0238 | 0.0012–0.1256 | 2.09 | 1.1384 | 1.0982–1.1765 |
| Masvingo | 0.0012 | 1.52E-04 - 0.003 | 0.065 | 1.8235 | 1.8139–1.8350 | 99.94 | 1.8246 | 1.8158–1.8355 |
| Matabeleland North | 0.0353 | 0.0164–0.0875 | 65.25 | 0.0188 | 7.29E-04 - 0.0891 | 34.75 | 0.0541 | 0.0208–0.138 |
| Matabeleland South | 0.4925 | 0.4697–0.5158 | 62.23 | 0.2989 | 0.2499–0.3756 | 37.77 | 0.7914 | 0.74–0.8684 |
Table showing results for seasonality testing.
| Province | Test statistic R | p-value |
| Harare | 9.7992 | 0.0074 |
| Bulawayo | 0.3625 | 0.8342 |
| Mashonaland West | 6.9417 | 0.0311 |
| Mashonaland Central | 0.1040 | 0.9493 |
| Mashonaland East | 6.1335 | 0.0466 |
| Midlands | 0.7608 | 0.6836 |
| Masvingo | 1.1860 | 0.5527 |
| Manicaland | 13.0533 | 0.0015 |
| Matabeleland South | 7.1850 | 0.0275 |
| Matabeleland North | 0.1395 | 0.9326 |
Bold provinces are where the seasonality test result is found to be positive. : Denote the provinces where seasonality presents at the significance level and : denote the provinces where seasonality present at the significance level .
Number of cases from cholera projected between the end of 2008–09 epidemic to January 1, 2012, by province under base case and under each intervention scenario at an optimal rate.
| Harare | Bulawayo | Mash west | Mash cen | Mash east | Midlands | Masvin | Manica | Mata south | Mata north | Total | |
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| 752 (623–936) | 5 (4–7) | 3118 (2788–3463) | 987 (858–1161) | 141 (121–163) | 163 (131–206) | 138 (112–170) | 766 (683–859) | 188 (173–204) | 82 (72–95) | 6340 (5565–7264) |
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| 111 (96–132) | * | 336 (310–381) | 50 (39–61) | 3 (2–5) | 5 (3–8) | 2 (1–3) | 112 (100–122) | 42 (40–44) | 30 (25–37) | 691 (616–793) |
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| 699 (198–934) | * | 2446 (653–3175) | 565 (116–985) | 126 (7–159) | 141 (7–204) | 117 (5–168) | 672 (222–858) | 170 (79–201) | * | 4936 (1287–6684) |
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| 358 (306–427) | * | 1149 (1060–1227) | 86 (67–107) | 4 (3–6) | 6 (4–8) | 2 (2–2) | 402 (354–440) | 126 (120–133) | * | 2133 (1916–2350) |
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| 453 (387–546) | * | 1513 (1396–1626) | 131 (105–161) | 6 (5–9) | 10 (8–13) | 4 (4–4) | 496 (439–546) | 146 (138–155) | * | 2759 (2482–3060) |
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| 102 (71–124) | * | 298 (224–324) | 50 (39–60) | 3 (2–4) | 4 (3–6) | 1 (1–2) | 102 (71–114) | 42 (31–47) | 31 (25–39) | 633 (467–720) |
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| 104 (90–123) | * | 303 (281–320) | 50 (39–61) | 3 (2–4) | 4 (3–6) | 1 (1–2) | 105 (94–113) | 45 (43–46) | 32 (27–39) | 647 (580–714) |
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| 101 (69–123) | * | 287 (213–332) | 47 (37–59) | 3 (2–5) | 5 (3–7) | 2 (1–4) | 103 (71–116) | 40 (29–43) | 30 (26–36) | 618 (451–725) |
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| 296 (154–367) | * | 991 (544–1075) | 77 (58–99) | 4 (3–5) | 5 (3–8) | 2 (2–2) | 340 (186–396) | 113 (69–127) | 80 (60–94) | 1908 (1079–2173) |
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| 103 (71–123) | * | 293 (223–320) | 49 (39–60) | 3 (2–4) | 4 (3–6) | 1 (1–2) | 101 (71–113) | 45 (43–47) | 31 (24–39) | 630 (477–714) |
Data are given in the format [mean (95% CI)].
PH & CWD: Promoting hand-hygiene & clean water distribution; VA: Vaccination; TR: Treatment; SN: Sanitation; PH & CWD + TR + VA: Promoting hand-hygiene & clean water distribution plus treatment with vaccination; PH & CWD + TR + SN: Promoting hand-hygiene & clean water distribution plus treatment with sanitation; PH & CWD + VA + SN: Promoting hand-hygiene & clean water distribution plus vaccination with sanitation; VA + TR + SN: Vaccination plus treatment with sanitation; PH & CWD + TR + VA + SN: Promoting hand-hygiene & clean water distribution plus treatment plus vaccination with sanitation. * indicate the intervention/intervention combination which do not have any effect on case reduction in a province.
Average optimal rate at which different intervention should be given between the end of 2008–09 epidemic to January 1, 2012, for each province.
| Harare | Mash west | Mash cen | Mash east | Midlands | |
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| 12.91(12.16–14.01) | 20.18(19.35–22.53) | 7.65(6.73–9.63) | 3.85(2.37–13.66) | 4.26(3.58–7.24) |
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| 1.17(2.82E-04–14.95) | 0.96(2.96E-04–13.49) | 1.61(4.46E-04–17.36) | 0.96(3.8E-04–13.22) | 1.25(2.52E-04–11.74) |
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| 23.86(22.88–25.33) | 30.05(29.49–30.79) | 13.91(13.39–15.06) | 4.89(3.44–11.76) | 9.31(8.81–10.96) |
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| 10.33(9.11–11.63) | 16.66(16.19–17.35) | 5.73(5.23–7.13) | 2.72(2.57–3.05) | 3.82(3.38–5.70) |
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| 8.16(4.12–9); 20.32(8.53–22.38); 0.63(2.78E-04–8.11) | 11.51(5.95–12.34); 25.11(10.87–27.24); 0.91(3E-04–13.53) | 2.41(1.07–3.17); 13.14(4.79–14.48); 0.95(4.39E-04–15.01) | 0.30(0.30–0.31); 3.72(1.47–6.45); 1.57(3.8E-04–10.6) | 0.31(0.24–0.47); 8.85(2.59–13.52); 0.97(2.52E-04–13.21) |
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| 8.40(8.04–8.85); 21.21(19.58–22.01); 0.16(0.15–0.17) | 12.05(11.78–12.25); 26.65(26.09–27.39); 0.82(0.74–0.91) | 2.49(1.99–3.13); 14(13.43–15.99); 0.15(0.15–0.15) | 0.30(0.30–0.30); 4.59(3.26–6.98); 0.0055(0–0.056) | 0.32(0.24–0.55); 10.08(8.58–21.71); 0.023(0–0.51) |
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| 11.34(5.09–13.48); 1.54(2.82E-04–13.86); 1.53(0.43–1.94) | 15.09(7.09–19.40); 2.78(3E-04–13.99); 3.07(0.88–4.80) | 7.38(2.18–12.47); 0.75(4.39E-04–14.46); 2.09(0.44–6.77) | 3.83(0.90–19.34); 0.73(3.8E-04–11.43); 2.5(0.26–14.59) | 4(0.86–8.55); 0.81(2.52E-04–11.3); 2.31(0.09–6.32) |
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| 1.96(2.82E-04–15.35); 20.24(8.53–23.46); 2.85(0.81–3.55) | 0.196(2.95E-04–4.099); 27.85(11.2–29.15); 5.33(1.44–5.63) | 1.23(4.39E-04–14.38); 12.66(4.76–14.53); 0.94(0.44–1.26) | 0.45(3.8E-04–7.31); 4.31(1.66–7.13); 0.16(0.15–0.20) | 1.46(2.52E-04–13.40); 8.4(2.6–13.07); 0.16(0.13–0.19) |
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| 8.25(4.02–8.97); 20.85(8.45–22.45); 0.45(2.39E-04–10.93); 0.16(0.15–0.18) | 11.32(5.93–12.23); 24.74(10.85–27.27); 0.84(3E-04–12.03); 0.75(0.21–0.93) | 2.41(1.09–3.21); 13.23(4.85–15.61); 0.996(4.39E-04–14.36); 0.15(0.15–0.15) | 0.30(0.30–0.30); 4.38(1.83–7.6); 0.51(3.8E-04–12.08); 0.005(0–0.05) | 0.31(0.24–0.34); 10.35(8.79–19.02); 2.7E-04(2.5E-04–3.04E-04); 0.002(0–0.039) |
Data for vaccination are given according to its total coverage percentage and data for treatment, hand-hygiene & clean water distribution (PH & CWD) and sanitation given according to average coverage percentage per day. All data are given in the format [mean (95% CI)]. Data for the Bulawayo province is not given as different interventions have no effect on case or death reduction in this region.
Notations in the first column are exactly same as Table 5. * indicate the intervention/intervention combinations which do not have any effect on case or death reduction in a province.
Optimal cost (in USD) projected between the end of 2008–09 epidemic to January 1, 2012, by province under each intervention scenario at an optimal rate.
| Harare | Mash west | Mash cen | Mash east | Midlands | |
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| 8.28 | 2.82 | 3.75 | 8.16 | 8.95 |
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| 3.25 | 4.55 | 3.20 | 1.91 | 4.07 |
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| 1.26 | 5.13 | 2.78 | 2.69 | 3.07 |
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| 2.96 | 1.24 | 8.05 | 9.77 | 1.16 |
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| 1.99 | 2.22 | 1.25 | 3.91 | 3.17 |
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| 4.97 | 1.58 | 2.20 | 2.74 | 3.23 |
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| 3.99 | 6.50 | 1.20 | 1.60 | 2.59 |
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| 4.55 | 1.09 | 1.98 | 9.65 | 4.31 |
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| 1.11 | 2.36 | 1.31 | 7.55 | 3.21 |
Costs are given in the format [mean(95% CI)]. Cost corresponding to Bulawayo province is not given as different interventions have no effect on case or death reduction in this region.
Notations in the first column are exactly same as Table 5. Here Ek = 10. * indicate the intervention/intervention combination which do not have any effect on case or death reduction in a province.
Cost per averted case (in USD) projected between the end of 2008–09 epidemic to January 1, 2012, by province under each intervention scenario at an optimal rate.
| Harare | Mash west | Mash cen | Mash east | Midlands | |
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| 1.30 | 1.01 | 4.02 | 5.92 | 5.73 |
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| 5.30 | 1.97 | 1.79 | 1.26 | 1.78 |
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| 2.62 | 3.09 | 1.95 | 1.95 |
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| 7.77 | 9.44 | 7.24 | 7.65 |
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| 7.87 | 1.42 | 2.80 | 2.16 |
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| 7.70 | 5.61 | 2.36 | 1.98 | 2.04 |
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| 6.03 | 2.25 | 1.36 | 1.12 | 1.80 |
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| 8.25 | 4.72 | 2.23 | 6.60 | 2.94 |
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| 1.87 | 8.34 | 1.50 | 5.07 | 2.02 |
Data are given in the format [mean (95% CI)]. Data corresponding to Bulawayo province is not given as different interventions have no effect on case or death reduction in this region.
Notations in the first column are exactly same as Table 5. Here Ek = 10. * indicate the intervention/intervention combination which do not have any effect on case or death reduction in a province.
Table 6. Number of deaths from cholera projected between the end of 2008–09 epidemic to January 1, 2012, by province under base case and under each intervention scenario at an optimal rate.
| Harare | Bulawayo | Mash west | Mash cen | Mash east | Midlands | Masvin | Manica | Mata south | Mata north | Total | |
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| 26 (22–31) | 0 (0–0) | 135 (120–151) | 33 (29–39) | 10 (9–12) | 8 (6–10) | 9 (8–11) | 38 (34–42) | 6 (5–6) | 6 (5–7) | 271 (238–309) |
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| 5 (4–6) | * | 19 (18–21) | 3 (2–3) | 0 (0–0) | 0 (0–0) | 0 (0–0) | 7 (6–8) | 2 (2–2) | 3 (2–3) | 39 (34–43) |
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| 24 (8–31) | * | 107 (32–138) | 19 (5–34) | 9 (0–11) | 7 (0–10) | 8 (0–11) | 33 (12–42) | 5 (3–6) | * | 212 (60–283) |
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| 8 (7–9) | * | 31 (29–33) | 3 (2–3) | 0 (0–0) | 0 (0–0) | 0 (0–0) | 12 (11–13) | 2 (2–3) | * | 56 (51–61) |
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| 16 (14–19) | * | 68 (62–73) | 5 (4–6) | 0 (0–0) | 0 (0–1) | 0 (0–0) | 25 (22–27) | 5 (4–5) | * | 119 (106–131) |
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| 3 (3–4) | * | 13 (11–14) | 2 (2–3) | 0 (0–0) | 0 (0–0) | 0 (0–0) | 5 (4–5) | 1 (1–1) | 2 (2–3) | 26 (23–30) |
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| 3 (3–4) | * | 13 (12–14) | 2 (2–3) | 0 (0–0) | 0 (0–0) | 0 (0–0) | 5 (4–5) | 1 (1–1) | 2 (2–3) | 26 (24–30) |
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| 5 (3–5) | * | 17 (14–19) | 3 (2–3) | 0 (0–0) | 0 (0–0) | 0 (0–0) | 7 (5–7) | 2 (1–2) | 3 (2–3) | 37 (27–39) |
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| 7 (4–8) | * | 28 (18–30) | 2 (2–3) | 0 (0–0) | 0 (0–0) | 0 (0–0) | 10 (6–12) | 2 (1–2) | 4 (3–4) | 53 (34–59) |
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| 3 (3–4) | * | 13 (11–14) | 2 (2–3) | 0 (0–0) | 0 (0–0) | 0 (0–0) | 5 (4–5) | 1 (1–1) | 2 (2–3) | 26 (23–30) |
Data are given in the format [mean (95% CI)].
Notations in the first column are exactly same as Table 5. * indicate the intervention/intervention combination which do not have any effect on death reduction in a province.