| Literature DB >> 32888118 |
T Alex Perkins1, Guido España2.
Abstract
The COVID-19 pandemic has forced societies across the world to resort to social distancing to slow the spread of the SARS-CoV-2 virus. Due to the economic impacts of social distancing, there is growing desire to relax these measures. To characterize a range of possible strategies for control and to understand their consequences, we performed an optimal control analysis of a mathematical model of SARS-CoV-2 transmission. Given that the pandemic is already underway and controls have already been initiated, we calibrated our model to data from the USA and focused our analysis on optimal controls from May 2020 through December 2021. We found that a major factor that differentiates strategies that prioritize lives saved versus reduced time under control is how quickly control is relaxed once social distancing restrictions expire in May 2020. Strategies that maintain control at a high level until at least summer 2020 allow for tapering of control thereafter and minimal deaths, whereas strategies that relax control in the short term lead to fewer options for control later and a higher likelihood of exceeding hospital capacity. Our results also highlight that the potential scope for controlling COVID-19 until a vaccine is available depends on epidemiological parameters about which there is still considerable uncertainty, including the basic reproduction number and the effectiveness of social distancing. In light of those uncertainties, our results do not constitute a quantitative forecast and instead provide a qualitative portrayal of possible outcomes from alternative approaches to control.Entities:
Keywords: Coronavirus; Epidemic; Infectious disease dynamics; Ordinary differential equations; Pontryagin’s Maximum Principle
Mesh:
Year: 2020 PMID: 32888118 PMCID: PMC7473596 DOI: 10.1007/s11538-020-00795-y
Source DB: PubMed Journal: Bull Math Biol ISSN: 0092-8240 Impact factor: 1.758
State variables in the model
| Symbol | Definition |
|---|---|
| Susceptible individuals | |
| Exposed but not yet infectious | |
| Asymptomatic infections | |
| Symptomatic infections | |
| Hospitalized infections | |
| Vaccinated individuals who have not been infected | |
| Control with non-pharmaceutical interventions |
Model parameters
| Symbol | Definition | Min | Mid | Max | Source |
|---|---|---|---|---|---|
| Relative infectiousness of asymptomatic infections | 0.046 | 0.602 | 0.981 |
Perkins et al. ( | |
| Transmission coefficient | 0.514 | 0.600 | 0.686 |
Park et al. ( | |
| Rate of progression through infectious stage | 0.125 | 0.31 | 0.5 |
Chinazzi et al. ( | |
| Baseline per capita death rate | – | – |
Martin et al. ( | ||
| Minimum probability of death following hospitalization | 0.0865 | 0.104 | 0.1213 |
Centers for Disese Control and Prevention ( | |
| Maximum probability of death following hospitalization | 0.233 | 0.28 | 0.328 |
Onder et al. ( | |
| Per exposure protection from vaccination | 0.5 | 0.8 | 0.9 | Assumed | |
| Rate of progression through hospitalization | 0.0485 | 0.075 | 0.172 | ||
| Importation rate of infected people | Calibrated | ||||
| Probability of hospitalization among symptomatic infections | 0.207 | 0.26 | 0.314 |
Centers for Disese Control and Prevention ( | |
| Birth rate | – | – |
Martin et al. ( | ||
| Rate at which vaccines are administered | 0.001516 | 0.00197 | 0.002467 | ||
| Rate of progression to infectiousness following infection | 0.166 | 0.2 | 0.333 |
Chinazzi et al. ( | |
| Proportion of infections that result in symptoms | 0.5 | 0.82 | 0.9 |
Mizumoto et al. ( | |
| Day on which vaccination begins | 365 | 456 | 548 |
Amanat and Krammer ( | |
| Proportion of deaths observed | 0.5 | – | 0.8 | Assumed | |
| Steepness of increase in death probability when | 1403 | 701 | 350 | Assumed | |
| Maximum hospital capacity | – | – | |||
| Maximum value of the control | 0.5 | 0.7 | 0.9 |
Jarvis et al. ( |
Parameterization of , , , , , , , , and is explained in further detail in Sect. 2.4. The timescale of all parameters related to time is daily
Fig. 1Relationship between the number of hospitalizations and the probability of death from COVID-19 among hospitalized patients. The parameters and represent lower and upper bounds on the probability of death, and represents the hospital capacity above which the probability of death exceeds . Hospitalizations are quantified as a proportion of the overall population
Fig. 2Reported (red) and simulated (black) numbers of daily deaths in the USA resulting from model calibration under 18 different parameter scenarios (black lines) (Color Figure Online)
Calibrated estimates of the importation rate, , under 18 scenarios about the values of , , and
| 3 | 0.5 | 0.5 | |
| 3.5 | 0.5 | 0.5 | |
| 4 | 0.5 | 0.5 | |
| 3 | 0.7 | 0.5 | |
| 3.5 | 0.7 | 0.5 | |
| 4 | 0.7 | 0.5 | |
| 3 | 0.9 | 0.5 | |
| 3.5 | 0.9 | 0.5 | |
| 4 | 0.9 | 0.5 | |
| 3 | 0.5 | 0.8 | |
| 3.5 | 0.5 | 0.8 | |
| 4 | 0.5 | 0.8 | |
| 3 | 0.7 | 0.8 | |
| 3.5 | 0.7 | 0.8 | |
| 4 | 0.7 | 0.8 | |
| 3 | 0.9 | 0.8 | |
| 3.5 | 0.9 | 0.8 | |
| 4 | 0.9 | 0.8 |
Fig. 3Convergence of solutions of under parameters , , , and . Left: Colors indicate values of for each day in 2020 and 2021 across 2,000 iterations of the forward–backward sweep algorithm. Right: Across iterations, the value of the objective functional, J(u), decreased steadily until cycling for the remaining iterations (Color Figure Online)
Fig. 4Dependence of time under control (blue) and cumulative deaths (red) on c (x-axis), (columns), (rows), and (markers). Deaths are quantified as a proportion of the overall population (Color Figure Online)
Fig. 5Optimal control under parameters with maximal ability to control the pandemic, with maximal weighting on minimization of deaths. Panels show the optimal control (bottom) and its impacts on the dynamics of hospitalized (middle) and susceptible (top) compartments with , , , and . Vaccination is introduced at the time indicated by the arrow, with the vaccinated population (orange) reducing the susceptible population. Through April 2020 (gray shading), the value of the control is fixed according to its calibrated trajectory. The dashed horizontal line indicates hospital capacity (Color Figure Online)
Fig. 7Optimal control under parameters with maximal ability to control the pandemic, with minimal weighting on minimization of deaths. Panels show the optimal control (bottom) and its impacts on the dynamics of hospitalized (middle) and susceptible (top) compartments with , , , and . Vaccination is introduced at the time indicated by the arrow, with the vaccinated population (orange) reducing the susceptible population. Through April 2020 (gray shading), the value of the control is fixed according to its calibrated trajectory. The dashed horizontal line indicates hospital capacity (Color Figure Online)
Fig. 8Optimal control under parameters with maximal ability to control the pandemic, with maximal weighting on minimization of deaths. Panels show the optimal control (bottom) and its impacts on the dynamics of hospitalized (middle) and susceptible (top) compartments with , , , and . Vaccination is introduced at the time indicated by the arrow, with the vaccinated population (orange) reducing the susceptible population. Through April 2020 (gray shading), the value of the control is fixed according to its calibrated trajectory. The dashed horizontal line indicates hospital capacity (Color Figure Online)
Fig. 9Optimal control under parameters with maximal ability to control the pandemic, with maximal weighting on minimization of deaths. Panels show the optimal control (bottom) and its impacts on the dynamics of hospitalized (middle) and susceptible (top) compartments with , , , and . Vaccination is introduced at the time indicated by the arrow, with the vaccinated population (orange) reducing the susceptible population. Through April 2020 (gray shading), the value of the control is fixed according to its calibrated trajectory. The dashed horizontal line indicates hospital capacity (Color Figure Online)
Fig. 6Optimal control under parameters with maximal ability to control the pandemic, with intermediate weighting on minimization of deaths. Panels show the optimal control (bottom) and its impacts on the dynamics of hospitalized (middle) and susceptible (top) compartments with , , , and . Vaccination is introduced at the time indicated by the arrow, with the vaccinated population (orange) reducing the susceptible population. Through April 2020 (gray shading), the value of the control is fixed according to its calibrated trajectory. The dashed horizontal line indicates hospital capacity (Color Figure Online)
Fig. 10Dependence of time under control (blue) and cumulative deaths (red) on a shift in the timing of u(t) before April 30, 2020 (x-axis), (columns), (rows), and (markers). Deaths are quantified as a proportion of the overall population (Color Figure Online)
Fig. 11Optimal control (bottom) and its impacts on the dynamics of hospitalized (middle) and susceptible (top) compartments with , , , , and the initiation of control delayed by 21 days. Vaccination is introduced at the time indicated by the arrow, with the vaccinated population (orange) reducing the susceptible population. Through April 2020 (gray shading), the value of the control is fixed according to its calibrated trajectory. The dashed horizontal line indicates hospital capacity (Color Figure Online)