| Literature DB >> 36233103 |
Ayman Ahmed1,2,3,4, Mustafa Abubakr5, Hamza Sami6, Isam Mahdi6, Nouh S Mohamed4, Jakob Zinsstag2,3.
Abstract
As part of our surveys of the invasive malaria vector Anopheles stephensi in four Sudanese states, including North and South Kordofan, Sennar, and White Nile, we collected 166 larvae. Our morphological identification confirmed that 30% of the collected mosquito samples were Anopheles species, namely An. gambiae s.l. and An. stephensi, while the 117 Aedes specimens were Ae. luteocephalus (39%), Ae. aegypti (32%), Ae. vexans (9%), Ae. vittatus (9%), Ae. africanus (6%), Ae. metalicus (3%), and Ae. albopictus (3%). Considering the serious threat of Ae. albopictus emergence for the public health in the area and our limited resources, we prioritized Ae. albopictus samples for further genomic analysis. We extracted the DNA from the three specimens and subsequently sequenced the cytochrome oxidase 1 (CO1) gene and confirmed their identity as Aedes albopictus and their potential origin by phylogenetic and haplotype analyses. Aedes albopictus, originating from Southeast Asia, is an invasive key vector of chikungunya and dengue. This is the first report and molecular characterization of Ae. albopictus from Sudan. Our sequences cluster with populations from the Central African Republic and La Réunion. Worryingly, this finding associates with a major increase in chikungunya and dengue outbreaks in rural areas of the study region and might be linked to the mosquito's spread across the region. The emergence of Ae. albopictus in Sudan is of serious public health concern and urges for the improvement of the vector surveillance and control system through the implementation of an integrated molecular xenosurveillance. The threat of major arboviral diseases in the region underlines the need for the institutionalization of the One Health strategy for the prevention and control of future pandemics.Entities:
Keywords: Aedes aegypti; Aedes africanus; Aedes luteocephalus; Aedes metalicus; Aedes vexans; Aedes vittatus; Anopheles stephensi; One Health; Sudan; arboviruses; haplotype analysis; invasive diseases vectors; phylogenetic analysis
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Year: 2022 PMID: 36233103 PMCID: PMC9570206 DOI: 10.3390/ijms231911802
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 6.208
Figure 1Map of Sudan showing the geographical distribution of identified Aedes mosquitoes in the study area.
Figure 2Maximum likelihood phylogenetic tree showing the relation between the Sudanese Ae. albopictus sequences and 103 African reference sequences. The Sudan Ae. albopictus sequences are highlighted in bold. The reference sequences along with their accession numbers and origin of the isolate are shown for each. DRC: Demogratic Republic of Congo, CAR: Central African Republic, R Congo: Republic of Congo. An. stephensi (Accession No. NC_028223.1) was used as an outgroup taxon. The branch to the outgroup was shortened by 0.020 substitutions per site. The bootstrap consensus tree inferred from 1000 replicates.
Figure 3Aedes albopictus haplotype distribution among African countries. Countries or regions where a haplotype is present are indicated by (+), whereas, the absence of the haplotype is indicated by (−).
Diversity and neutrality indices for Ae. albopictus populations in Africa calculated from the nucleotide datasets of the sequences available in the GenBank database at NCBI.
| Populations * | N | S | H | Hd ± VarHd | Pi | Tajima’s D | Fu Li’s D | Fu Li’s F |
|---|---|---|---|---|---|---|---|---|
| MadagasCAR | 12 | 6 | 7 | 0.864 ± 0.00618 | 0.00321 | −1.0217 | −1.1084 | −1.2312 |
| Algeria | 7 | 1 | 2 | 0.286 ± 0.03856 | 0.00063 | −1.0062 | −1.0488 | −1.1015 |
| CAR | 2 | 2 | 2 | 1.0 ± 0.25 | 0.00442 | n.d. | n.d. | n.d. |
| DRC | 45 | 2 | 3 | 0.457 ± 0.00562 | 0.00129 | 0.5144 | 0.7583 | 0.7967 |
| Mauritius | 2 | 2 | 2 | 1.0 ± 0.25 | 0.00442 | n.d. | n.d. | n.d. |
| Mayotte | 3 | 2 | 2 | 0.667 ± 0.09877 | 0.00294 | n.d. | n.d. | n.d. |
| Cameroon | 9 | 5 | 6 | 0.917 ± 0.00526 | 0.00343 | −0.6542 | −0.5973 | −0.6796 |
| Morocco | 2 | 0 | 1 | 0.0 ± 0.00 | 0.0 | n.d. | n.d. | n.d. |
| R Congo | 3 | 2 | 3 | 1.0 ± 0.07407 | 0.00294 | n.d. | n.d. | n.d. |
| La Réunion | 14 | 3 | 4 | 0.648 ± 0.1353 | 0.0017 | −0.5651 | 0.0168 | −0.1524 |
| Sudan | 3 | 0 | 1 | 0.0 ± 0.00 | 0.0 | n.d. | n.d. | n.d. |
| Nigeria | 1 | 0 | n.a. | 0.0 ± 0.00 | 0.0 | n.d. | n.d. | n.d. |
| Seychelles | 1 | 0 | n.a. | 0.0 ± 0.00 | 0.0 | n.d. | n.d. | n.d. |
| Benin | 1 | 0 | n.a. | 0.0 ± 0.00 | 0.0 | n.d. | n.d. | n.d. |
* CAR: Central African Republic, DRC: Democratic Republic of the Congo, R Congo: Republic of the Congo. N: number of sequences, S: number of segregating sites, H: number of haplotypes, Hd ± VarHd: haplotype diversity ± variance of haplotype diversity, Pi: nucleotide diversity per site. n.a.: not applicable, and n.d.: not determined.
Pairwise fixation index (Fst test values) between the African populations of Ae. albopictus calculated from the nucleotide datasets available in the GenBank.
| DRC | Madagascar | Mauritius | Mayotte | Morocco | R Congo | Sudan | Cameroon | Reunion | CAR | |
|---|---|---|---|---|---|---|---|---|---|---|
| DRC | - | - | - | - | - | - | - | - | - | - |
| Madagascar | 0.613 | - | - | - | - | - | - | - | - | - |
| Mauritius | 0.538 | 0.058 | - | - | - | - | - | - | - | - |
| Mayotte | 0.657 |
| 0.167 | - | - | - | - | - | - | - |
| Morocco | 0.837 | 0.127 |
| 0.333 | - | - | - | - | - | - |
| R Congo |
| 0.442 | 0.375 | 0.500 | 0.600 | - | - | - | - | - |
| Sudan | 0.787 | 0.603 | 0.500 | 0.667 | 1.000 | 0.667 | - | - | - | - |
| Cameroon | 0.051 | 0.062 | 0.021 | 0.178 | 0.842 | 0.054 | 0.662 | - | - | - |
| Reunion | 0.648 |
|
| 0.151 | 0.103 | 0.462 | 0.615 | 0.0721 | - | - |
| CAR | 0.456 | 0.390 | 0.333 | 0.444 | 0.500 | 0.444 |
| 0.493 | 0.308 | - |
| Algeria | 0.776 | 0.098 |
| 0.292 |
| 0.553 | 0.875 | 0.943 | 0.077 | 0.467 |
CAR: Central African Republic, DRC: Democratic Republic of Congo, and R Congo: Republic of the Congo. Populations where small genetic differentiation is reported were written in bold. Population consisted of only one sequence were excluded: Nigeria, Benin, and Seychelles.
Figure 4Parsimony haplotype network of the 103 African Ae. albopictus reference sequences and the 3 Sudanese Ae. albopictus sequences. Haplotypes of each region are presented using color coding. The number of each haplotype is written next to its representing node. Hatch marks in lines linking between the haplotypes are indicative of the numbers of nucleotide diversity. DRC: Democratic Republic of the Congo, R Congo: Republic of the Congo, and CAR: Central African Republic.
Figure 5Map of Sudan showing the geographical distribution of chikungunya virus infections before (blue) and after (red) 2020 throughout the country. Up to now, no transmission is reported in the two states without color: White Nile and Blue Nile states. The number of cases reported during two outbreaks in the neighboring countries, Chad and Ethiopia, are included in the textboxes.
Figure 6Map of Sudan shows the study area shaded in grey.