| Literature DB >> 36230616 |
Daisuke Nishizawa1, Takeshi Terui2, Kunihiko Ishitani2, Shinya Kasai1, Junko Hasegawa1, Kyoko Nakayama1, Yuko Ebata1, Kazutaka Ikeda1.
Abstract
Considerable individual differences have been widely observed in the sensitivity to opioids. We conducted a genome-wide association study (GWAS) in patients with cancer pain to identify potential candidate single-nucleotide polymorphisms (SNPs) that contribute to individual differences in opioid analgesic requirements in pain treatment by utilizing whole-genome genotyping arrays with more than 650,000 markers. The subjects in the GWAS were 428 patients who provided written informed consent and underwent treatment for pain with opioid analgesics in a palliative care unit at Higashi-Sapporo Hospital. The GWAS showed two intronic SNPs, rs1283671 and rs1283720, in the ANGPT1 gene that encodes a secreted glycoprotein that belongs to the angiopoietin family. These two SNPs were strongly associated with average daily opioid requirements for the treatment of pain in both the additive and recessive models (p < 5.0000 × 10-8). Several other SNPs were also significantly associated with the phenotype. In the gene-based analysis, the association was significant for the SLC2A14 gene in the additive model. These results indicate that these SNPs could serve as markers that predict the efficacy of opioid analgesics in cancer pain treatment. Our findings may provide valuable information for achieving satisfactory pain control and open new avenues for personalized pain treatment.Entities:
Keywords: analgesics; cancer pain; genome-wide association study; opioids; single-nucleotide polymorphisms
Year: 2022 PMID: 36230616 PMCID: PMC9564079 DOI: 10.3390/cancers14194692
Source DB: PubMed Journal: Cancers (Basel) ISSN: 2072-6694 Impact factor: 6.575
Demographic and clinical data of patient subjects.
| Demographic Data: |
| Minimum | Maximum | Mean | SD | Median | ||
|---|---|---|---|---|---|---|---|---|
| Gender | ||||||||
| male | 213 | |||||||
| female | 215 | |||||||
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| 428 | 20 | 94 | 71.59 | 12.33 | 72.50 | ||
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| 423 | 136 | 181 | 157.61 | 8.56 | 158.00 | ||
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| 421 | 30 | 110 | 50.56 | 11.07 | 50.00 | ||
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| lung cancer | 81 | breast cancer | 60 | |||||
| stomach cancer | 26 | pancreas cancer | 25 | |||||
| prostate cancer | 25 | colon cancer | 22 | |||||
| bladder cancer | 17 | rectal cancer | 13 | |||||
| hepatocellular cancer | 12 | esophageal cancer | 10 | |||||
| uterus cancer | 9 | ovary cancer | 8 | |||||
| others | 120 | |||||||
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| somatic pain | 38 | 390 | ||||||
| visceral pain | 346 | 82 | ||||||
| neuropathic pain | 327 | 101 | ||||||
| nausea | 193 | 138 | ||||||
| constipation | 113 | 245 | ||||||
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| Number of administered patients | 426 | 97 | 209 | 107 | 10 | 31 | 5 | 41 |
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| Total dose of opioids [mg/kg] | 419 | 0.060241 | 32.407407 | 1.74 | 3.09 | 0.8163265 | ||
| (converted to oral morphine) | ||||||||
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| NSAIDs | 137 | 291 | ||||||
| supplementary analgesics | 171 | 257 | ||||||
Top 30 candidate SNPs selected from the GWAS (additive model).
| Model | Rank | CHR | SNP | Position |
| Related Gene | Genotype (Patients) | Phenotype (Mean) | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A/A | A/B | B/B | A/A | A/B | B/B | |||||||
| Additive | 1 | 8 | rs1283671 | 107421459 | 3.876 × 10−11 * |
| 5 | 87 | 327 | 2.375 | 0.873 | 0.703 |
| Additive | 2 | 8 | rs1283720 | 107460100 | 4.007 × 10−11 * |
| 5 | 89 | 325 | 2.375 | 0.86 | 0.705 |
| Additive | 3 | 9 | GSA−rs72752701 | 125992274 | 3.879 × 10−8 * | 2 | 50 | 367 | 3.011 | 0.776 | 0.743 | |
| Additive | 4 | 1 | rs3917744 | 169608752 | 2.485 × 10−7 |
| 2 | 51 | 366 | 2.832 | 0.778 | 0.744 |
| Additive | 5 | 12 | rs11061996 | 1836333 | 2.846 × 10−7 |
| 2 | 47 | 370 | 2.774 | 0.714 | 0.752 |
| Additive | 6 | 3 | rs61355450 | 117954317 | 0.000000294 | 2 | 36 | 381 | 2.869 | 0.786 | 0.744 | |
| Additive | 6 | 3 | rs6798512 | 118019819 | 0.000000294 | 2 | 36 | 381 | 2.869 | 0.786 | 0.744 | |
| Additive | 8 | 12 | GSA-rs117577524 | 30549638 | 3.316 × 10−7 | 2 | 27 | 390 | 2.869 | 0.794 | 0.744 | |
| Additive | 9 | 8 | rs4620259 | 108979439 | 0.000000349 | 5 | 74 | 340 | 2.175 | 0.828 | 0.722 | |
| Additive | 10 | 16 | rs74007038 | 6785856 | 5.776 × 10−7 |
| 5 | 79 | 335 | 2.076 | 0.781 | 0.733 |
| Additive | 11 | 19 | rs75017760 | 8940941 | 0.00000115 |
| 2 | 64 | 353 | 2.883 | 0.708 | 0.755 |
| Additive | 12 | 13 | rs9529111 | 66652839 | 0.000001648 |
| 19 | 131 | 269 | 1.426 | 0.672 | 0.752 |
| Additive | 13 | 1 | 1:118813000 | 118270377 | 0.000001653 | 2 | 39 | 378 | 2.917 | 0.805 | 0.741 | |
| Additive | 14 | 11 | rs10501687 | 88799011 | 0.000001725 |
| 22 | 159 | 237 | 1.307 | 0.768 | 0.7 |
| Additive | 15 | 14 | kgp19644675 | 100077596 | 0.000001896 |
| 5 | 57 | 357 | 1.927 | 0.851 | 0.727 |
| Additive | 16 | 10 | rs10749151 | 114017465 | 0.000002292 | 7 | 105 | 307 | 1.833 | 0.704 | 0.752 | |
| Additive | 17 | 6 | rs17059990 | 99980179 | 0.0000023 |
| 2 | 65 | 352 | 2.817 | 0.866 | 0.726 |
| Additive | 18 | 2 | 2:42166453 | 41939313 | 0.00000233 |
| 35 | 162 | 220 | 1.168 | 0.74 | 0.702 |
| Additive | 19 | 12 | rs1554080 | 128183013 | 0.00000245 | 5 | 70 | 344 | 1.814 | 0.701 | 0.754 | |
| Additive | 20 | 2 | rs11692586 | 134159434 | 0.000003951 | 11 | 102 | 306 | 1.593 | 0.751 | 0.73 | |
| Additive | 21 | 16 | rs75384045 | 55308868 | 0.000004132 | 3 | 52 | 364 | 2.242 | 0.85 | 0.732 | |
| Additive | 22 | 18 | rs117231913 | 79691289 | 0.000004475 |
| 3 | 55 | 361 | 2.421 | 0.693 | 0.754 |
| Additive | 23 | 3 | rs73184492 | 189405146 | 0.000005259 | 1 | 53 | 364 | 3.509 | 0.939 | 0.718 | |
| Additive | 24 | 21 | rs2834573 | 34668083 | 0.000005392 | 2 | 93 | 324 | 2.646 | 0.696 | 0.764 | |
| Additive | 25 | 6 | kgp17238235 | 27175279 | 0.000006765 | 4 | 85 | 330 | 1.919 | 0.795 | 0.734 | |
| Additive | 26 | 6 | kgp3351958 | 122754906 | 0.00000681 | 2 | 36 | 380 | 2.838 | 0.709 | 0.751 | |
| Additive | 27 | 11 | rs10831496 | 88824823 | 0.000007262 |
| 24 | 167 | 228 | 1.251 | 0.757 | 0.707 |
| Additive | 28 | 1 | rs75731751 | 187443485 | 0.000007626 | 1 | 50 | 368 | 3.509 | 0.944 | 0.725 | |
| Additive | 29 | 18 | rs989644 | 4231203 | 0.000007922 |
| 1 | 49 | 368 | 3.509 | 0.784 | 0.742 |
| Additive | 30 | 12 | 12:132932218 | 132355632 | 0.000008031 | 1 | 20 | 395 | 3.509 | 0.78 | 0.743 | |
Model, the genetic model in which the GWAS selected candidate SNPs; CHR, chromosome number; Related gene, the gene that is closest to the SNP location; A/A, each SNP’s minor allele is homozygous; A/B, each SNP’s major allele is heterozygous; B/B, each SNP’s major allele is homozygous; * p < 5 × 10−8.
Top 30 candidate SNPs selected from the GWAS (dominant model).
| Model | Rank | CHR | SNP | Position |
| Related Gene | Genotype (Patients) | Phenotype (Mean) | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A/A | A/B | B/B | A/A | A/B | B/B | |||||||
| Dominant | 1 | 6 | kgp11947181 | 139582822 | 1.592 × 10−8 * | 0 | 2 | 417 | NA | 3.176 | 0.746 | |
| Dominant | 2 | 9 | 9:133013640 | 130251361 | 1.730 × 10−8 * | 0 | 2 | 417 | NA | 3.118 | 0.746 | |
| Dominant | 3 | 10 | rs763315292 | 119912126 | 3.807 × 10−8 * |
| 0 | 3 | 416 | NA | 2.62 | 0.744 |
| Dominant | 4 | 6 | 6:80456944 | 79747227 | 1.223 × 10−7 | 0 | 4 | 415 | NA | 2.434 | 0.742 | |
| Dominant | 5 | 7 | 7:118263373 | 118623319 | 2.066 × 10−7 | 0 | 2 | 417 | NA | 2.953 | 0.747 | |
| Dominant | 6 | 10 | rs77717582 | 126393947 | 4.341 × 10−7 | 0 | 23 | 396 | NA | 1.411 | 0.72 | |
| Dominant | 7 | 1 | rs755431252 | 175365091 | 4.979 × 10−7 |
| 0 | 3 | 416 | NA | 2.677 | 0.744 |
| Dominant | 8 | 13 | 13:88770953 | 88118698 | 5.634 × 10−7 | 0 | 4 | 415 | NA | 2.109 | 0.745 | |
| Dominant | 9 | 2 | rs63751260 | 47403309 | 0.000001091 |
| 0 | 2 | 416 | NA | 2.883 | 0.749 |
| Dominant | 10 | 19 | rs146815072 | 32830639 | 0.000001368 |
| 0 | 4 | 415 | NA | 2.289 | 0.743 |
| Dominant | 11 | 5 | rs145778277 | 161311253 | 0.0000014 |
| 0 | 13 | 406 | NA | 1.516 | 0.734 |
| Dominant | 12 | 18 | 18:3452222 | 3452225 | 0.000001471 |
| 0 | 2 | 415 | NA | 2.859 | 0.75 |
| Dominant | 13 | 9 | GSA-rs10967750 | 27166161 | 0.000001495 |
| 0 | 5 | 414 | NA | 1.993 | 0.743 |
| Dominant | 14 | 19 | 19:12311461 | 12200646 | 0.000001562 |
| 1 | 9 | 408 | 2.471 | 1.537 | 0.738 |
| Dominant | 15 | 4 | JHU_4.166326986 | 165405835 | 0.000001738 |
| 3 | 54 | 362 | 0.942 | 1.079 | 0.708 |
| Dominant | 16 | 13 | 13:77841745 | 77267610 | 0.000002003 |
| 0 | 4 | 412 | NA | 2.031 | 0.747 |
| Dominant | 17 | 6 | rs192596782 | 155305908 | 0.000002575 |
| 0 | 3 | 413 | NA | 2.397 | 0.745 |
| Dominant | 18 | 3 | rs117341459 | 39630484 | 0.00000258 | 0 | 4 | 415 | NA | 2.144 | 0.744 | |
| Dominant | 19 | 18 | rs4632226 | 3989188 | 0.000002665 |
| 1 | 27 | 390 | 0.179 | 1.287 | 0.722 |
| Dominant | 20 | 5 | kgp5717569 | 172042597 | 0.0000033 |
| 1 | 31 | 386 | 2.125 | 1.136 | 0.725 |
| Dominant | 21 | 8 | GSA-rs147608943 | 30052419 | 0.000003361 | 0 | 5 | 414 | NA | 1.955 | 0.743 | |
| Dominant | 22 | 8 | 8:40320989 | 40463470 | 0.000003413 | 0 | 4 | 414 | NA | 2.163 | 0.739 | |
| Dominant | 23 | 3 | kgp2760268 | 26300600 | 0.000003538 | 0 | 3 | 416 | NA | 2.323 | 0.747 | |
| Dominant | 24 | 1 | kgp15630468 | 18045740 | 0.000003604 | 0 | 12 | 407 | NA | 1.479 | 0.737 | |
| Dominant | 25 | 1 | kgp15515856 | 47636211 | 0.000004042 | 0 | 8 | 411 | NA | 1.59 | 0.742 | |
| Dominant | 26 | 3 | 3:40166299 | 40124808 | 0.00000439 |
| 0 | 2 | 415 | NA | 2.646 | 0.75 |
| Dominant | 27 | 3 | 3:40027538 | 39986047 | 0.000004617 |
| 0 | 2 | 417 | NA | 2.646 | 0.749 |
| Dominant | 28 | 3 | 3:149817230 | 150099443 | 0.000004786 | 0 | 4 | 415 | NA | 2.075 | 0.745 | |
| Dominant | 29 | 19 | 19:12306462 | 12195647 | 0.000005029 |
| 1 | 14 | 404 | 2.471 | 1.345 | 0.733 |
| Dominant | 29 | 19 | 19:12352578 | 12241763 | 0.000005029 | 1 | 14 | 404 | 2.471 | 1.345 | 0.733 | |
Model, the genetic model in which the GWAS selected the candidate SNPs; CHR, chromosome number; Related gene, the gene that is closest to the SNP location; A/A, each SNP’s minor allele is homozygous; A/B, each SNP’s major allele is heterozygous; B/B, each SNP’s major allele is homozygous; NA, not available; * p < 5 × 10−8.
Top 30 candidate SNPs selected from the GWAS (recessive model).
| Model | Rank | CHR | SNP | Position |
| Related Gene | Genotype (Patients) | Phenotype (Mean) | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A/A | A/B | B/B | A/A | A/B | B/B | |||||||
| Recessive | 1 | 8 | rs1283671 | 107421459 | 7.698 × 10−11 * |
| 5 | 87 | 327 | 2.375 | 0.873 | 0.703 |
| Recessive | 1 | 8 | rs1283720 | 107460100 | 7.698 × 10−11 * |
| 5 | 89 | 325 | 2.375 | 0.86 | 0.705 |
| Recessive | 3 | 9 | GSA-rs72752701 | 125992274 | 3.814 × 10−8 * | 2 | 50 | 367 | 3.011 | 0.776 | 0.743 | |
| Recessive | 4 | 1 | rs3917744 | 169608752 | 2.568 × 10−7 |
| 2 | 51 | 366 | 2.832 | 0.778 | 0.744 |
| Recessive | 5 | 12 | rs11061996 | 1836333 | 2.672 × 10−7 |
| 2 | 47 | 370 | 2.774 | 0.714 | 0.752 |
| Recessive | 6 | 3 | rs61355450 | 117954317 | 3.039 × 10−7 | 2 | 36 | 381 | 2.869 | 0.786 | 0.744 | |
| Recessive | 6 | 3 | rs6798512 | 118019819 | 3.039 × 10−7 | 2 | 36 | 381 | 2.869 | 0.786 | 0.744 | |
| Recessive | 6 | 12 | GSA-rs117577524 | 30549638 | 3.039 × 10−7 | 2 | 27 | 390 | 2.869 | 0.794 | 0.744 | |
| Recessive | 9 | 13 | rs9529111 | 66652839 | 4.469 × 10−7 |
| 19 | 131 | 269 | 1.426 | 0.672 | 0.752 |
| Recessive | 10 | 8 | rs4620259 | 108979439 | 5.146 × 10−7 | 5 | 74 | 340 | 2.175 | 0.828 | 0.722 | |
| Recessive | 11 | 16 | rs74007038 | 6785856 | 6.499 × 10−7 |
| 5 | 79 | 335 | 2.076 | 0.781 | 0.733 |
| Recessive | 12 | 19 | rs75017760 | 8940941 | 0.000001066 |
| 2 | 64 | 353 | 2.883 | 0.708 | 0.755 |
| Recessive | 13 | 1 | 1:118813000 | 118270377 | 0.000001725 | 2 | 39 | 378 | 2.917 | 0.805 | 0.741 | |
| Recessive | 14 | 10 | rs10749151 | 114017465 | 0.000001958 | 7 | 105 | 307 | 1.833 | 0.704 | 0.752 | |
| Recessive | 15 | 12 | rs1554080 | 128183013 | 0.000001979 | 5 | 70 | 344 | 1.814 | 0.701 | 0.754 | |
| Recessive | 16 | 14 | kgp19644675 | 100077596 | 0.000002605 |
| 5 | 57 | 357 | 1.927 | 0.851 | 0.727 |
| Recessive | 17 | 6 | rs17059990 | 99980179 | 0.000003439 |
| 2 | 65 | 352 | 2.817 | 0.866 | 0.726 |
| Recessive | 18 | 11 | rs10501687 | 88799011 | 0.000003562 |
| 22 | 159 | 237 | 1.307 | 0.768 | 0.7 |
| Recessive | 19 | 18 | rs117231913 | 79691289 | 0.000003767 |
| 3 | 55 | 361 | 2.421 | 0.693 | 0.754 |
| Recessive | 20 | 2 | rs11692586 | 134159434 | 0.00000408 | 11 | 102 | 306 | 1.593 | 0.751 | 0.73 | |
| Recessive | 21 | 21 | rs2834573 | 34668083 | 0.000004617 | 2 | 93 | 324 | 2.646 | 0.696 | 0.764 | |
| Recessive | 22 | 16 | rs75384045 | 55308868 | 0.000005399 | 3 | 52 | 364 | 2.242 | 0.85 | 0.732 | |
| Recessive | 23 | 2 | 2:42166453 | 41939313 | 0.000006107 |
| 35 | 162 | 220 | 1.168 | 0.74 | 0.702 |
| Recessive | 24 | 6 | kgp3351958 | 122754906 | 0.00000622 | 2 | 36 | 380 | 2.838 | 0.709 | 0.751 | |
| Recessive | 25 | 6 | kgp17238235 | 27175279 | 0.000007322 | 4 | 85 | 330 | 1.919 | 0.795 | 0.734 | |
| Recessive | 26 | 12 | 12:132932218 | 132355632 | 0.00000773 | 1 | 20 | 395 | 3.509 | 0.78 | 0.743 | |
| Recessive | 27 | 3 | rs73184492 | 189405146 | 0.000008219 | 1 | 53 | 364 | 3.509 | 0.939 | 0.718 | |
| Recessive | 27 | 18 | rs989644 | 4231203 | 0.000008219 |
| 1 | 49 | 368 | 3.509 | 0.784 | 0.742 |
| Recessive | 27 | 19 | rs112363595 | 56660873 | 0.000008219 | 1 | 18 | 399 | 3.509 | 0.707 | 0.748 | |
| Recessive | 30 | 8 | rs4734909 | 91861390 | 0.000009082 | 13 | 120 | 286 | 1.467 | 0.656 | 0.768 | |
Model, the genetic model in which the GWAS selected the candidate SNPs; CHR, chromosome number; Related gene, the gene that is closest to the SNP location; A/A, each SNP’s minor allele is homozygous; A/B, each SNP’s major allele is heterozygous; B/B, each SNP’s major allele is homozygous; * p < 5 × 10−8.
Figure 1Manhattan plot of GWAS outcomes. (a) Analytical plot in the additive model. (b) Analytical plot in the dominant model. (c) Analytical plot in the recessive model. The dashed red line shows the significant association threshold.
Top 20 candidate genes selected from gene-based analysis.
| Model | Rank | CHR | Gene Start Position | Gene Stop Position | Gene | nSNPs | Z Statistic |
|
|
|---|---|---|---|---|---|---|---|---|---|
| Additive | 1 | 12 | 7945108 | 8063744 |
| 30 | 4.6313 | 1.8167 × 10−6 | 0.035151328 * |
| Additive | 2 | 8 | 108241721 | 108530283 |
| 24 | 4.4216 | 4.8995 × 10−6 | 0.094800426 |
| Additive | 3 | 12 | 1909433 | 1965918 |
| 19 | 4.1283 | 0.000018275 | 0.353602975 |
| Additive | 4 | 6 | 170131718 | 170201680 |
| 4 | 3.978 | 0.000034747 | 0.672319703 |
| Additive | 5 | 20 | 1141205 | 1186059 |
| 8 | 3.9518 | 0.000038784 | 0.750431616 |
| Additive | 6 | 17 | 39113968 | 39163387 |
| 7 | 3.938 | 0.000041089 | 0.795031061 |
| Additive | 7 | 17 | 19102674 | 19145839 |
| 2 | 3.8561 | 0.000057607 | 1 |
| Additive | 8 | 7 | 112439202 | 112599971 |
| 5 | 3.8481 | 0.000059519 | 1 |
| Additive | 9 | 1 | 169538087 | 169619431 |
| 21 | 3.7461 | 0.000089799 | 1 |
| Additive | 10 | 17 | 39094669 | 39143144 |
| 5 | 3.7175 | 0.00010059 | 1 |
| Additive | 11 | 17 | 39129686 | 39170385 |
| 6 | 3.7019 | 0.00010702 | 1 |
| Additive | 12 | 1 | 245113007 | 245310466 |
| 26 | 3.6928 | 0.00011092 | 1 |
| Additive | 13 | 3 | 50106341 | 50176454 |
| 4 | 3.6532 | 0.00012949 | 1 |
| Additive | 14 | 1 | 60338980 | 60412462 |
| 2 | 3.6525 | 0.00012986 | 1 |
| Additive | 15 | 1 | 93625476 | 93764287 |
| 6 | 3.6329 | 0.00014014 | 1 |
| Additive | 16 | 13 | 75838808 | 76076250 |
| 42 | 3.6025 | 0.00015758 | 1 |
| Additive | 17 | 2 | 128828774 | 128973251 |
| 6 | 3.5918 | 0.00016422 | 1 |
| Additive | 18 | 5 | 32669176 | 32811819 |
| 19 | 3.5168 | 0.00021839 | 1 |
| Additive | 19 | 1 | 54477347 | 54539177 |
| 3 | 3.5143 | 0.00022045 | 1 |
| Additive | 20 | 6 | 169837307 | 170122159 |
| 15 | 3.4629 | 0.00026718 | 1 |
| Dominant | 1 | 15 | 41454923 | 41542941 |
| 5 | 4.3882 | 5.7145 × 10−6 | 0.108884083 |
| Dominant | 2 | 1 | 212983483 | 213040991 |
| 5 | 3.9154 | 0.000045129 | 0.859887966 |
| Dominant | 3 | 17 | 28236218 | 28455470 |
| 10 | 3.876 | 0.000053086 | 1 |
| Dominant | 4 | 20 | 9498036 | 9839689 |
| 86 | 3.6046 | 0.00015634 | 1 |
| Dominant | 5 | 18 | 28936740 | 29014875 |
| 17 | 3.548 | 0.00019409 | 1 |
| Dominant | 6 | 19 | 12253879 | 12320064 |
| 13 | 3.5248 | 0.00021191 | 1 |
| Dominant | 7 | 22 | 51041182 | 51086607 |
| 19 | 3.4757 | 0.00025478 | 1 |
| Dominant | 8 | 16 | 47091614 | 47197908 |
| 6 | 3.4494 | 0.00028092 | 1 |
| Dominant | 9 | 1 | 213011597 | 213092705 |
| 9 | 3.4493 | 0.00028106 | 1 |
| Dominant | 10 | 5 | 171268553 | 171453877 |
| 21 | 3.4178 | 0.00031566 | 1 |
| Dominant | 11 | 4 | 93198402 | 93245329 |
| 3 | 3.3954 | 0.00034267 | 1 |
| Dominant | 12 | 5 | 171449077 | 171635390 |
| 64 | 3.3934 | 0.00034512 | 1 |
| Dominant | 13 | 13 | 50466842 | 50530626 |
| 3 | 3.3782 | 0.00036482 | 1 |
| Dominant | 14 | 8 | 37680786 | 37727422 |
| 11 | 3.372 | 0.00037312 | 1 |
| Dominant | 15 | 18 | 54794293 | 54837531 |
| 15 | 3.3544 | 0.00039763 | 1 |
| Dominant | 16 | 12 | 116375711 | 116735143 |
| 33 | 3.349 | 0.00040551 | 1 |
| Dominant | 17 | 22 | 51019114 | 51072409 |
| 25 | 3.3244 | 0.00044301 | 1 |
| Dominant | 18 | 12 | 55503465 | 55544586 |
| 7 | 3.2881 | 0.00050434 | 1 |
| Dominant | 19 | 19 | 57301445 | 57372096 |
| 14 | 3.2739 | 0.00053034 | 1 |
| Dominant | 20 | 13 | 77598792 | 77921185 |
| 28 | 3.2397 | 0.00059826 | 1 |
| Recessive | 1 | 12 | 7945108 | 8063744 |
| 30 | 4.467 | 3.9655 × 10−6 | 0.073841576 |
| Recessive | 2 | 8 | 108241721 | 108530283 |
| 24 | 4.2961 | 8.6923 × 10−6 | 0.161859318 |
| Recessive | 3 | 12 | 1909433 | 1965918 |
| 19 | 4.2181 | 0.000012317 | 0.229354857 |
| Recessive | 4 | 20 | 1141205 | 1186059 |
| 8 | 3.9541 | 0.000038414 | 0.715307094 |
| Recessive | 5 | 17 | 39113968 | 39163387 |
| 7 | 3.9425 | 0.000040318 | 0.750761478 |
| Recessive | 6 | 6 | 170131718 | 170201680 |
| 4 | 3.9412 | 0.000040543 | 0.754951203 |
| Recessive | 7 | 17 | 19102674 | 19145839 |
| 2 | 3.8099 | 0.000069518 | 1 |
| Recessive | 8 | 7 | 112439202 | 112599971 |
| 5 | 3.8012 | 0.000071998 | 1 |
| Recessive | 9 | 1 | 169538087 | 169619431 |
| 21 | 3.7878 | 0.000076002 | 1 |
| Recessive | 10 | 2 | 128828774 | 128973251 |
| 6 | 3.7536 | 0.000087158 | 1 |
| Recessive | 11 | 13 | 75838808 | 76076250 |
| 42 | 3.7231 | 0.000098378 | 1 |
| Recessive | 12 | 17 | 39129686 | 39170385 |
| 6 | 3.7097 | 0.00010375 | 1 |
| Recessive | 13 | 17 | 39094669 | 39143144 |
| 5 | 3.7068 | 0.00010496 | 1 |
| Recessive | 14 | 3 | 50106341 | 50176454 |
| 4 | 3.6936 | 0.00011057 | 1 |
| Recessive | 15 | 1 | 60338980 | 60412462 |
| 2 | 3.6468 | 0.00013276 | 1 |
| Recessive | 16 | 16 | 85703690 | 85804735 |
| 11 | 3.5785 | 0.00017279 | 1 |
| Recessive | 17 | 12 | 1881123 | 2048002 |
| 41 | 3.5256 | 0.00021126 | 1 |
| Recessive | 18 | 1 | 93625476 | 93764287 |
| 6 | 3.5227 | 0.00021358 | 1 |
| Recessive | 19 | 3 | 47249516 | 47344941 |
| 3 | 3.4581 | 0.00027197 | 1 |
| Recessive | 20 | 6 | 169837307 | 170122159 |
| 15 | 3.454 | 0.00027618 | 1 |
Model, the genetic model in which candidate genes were selected by analysis; CHR, chromosome number; nSNPs, the number of SNPs annotated to the gene; Z Statistic, gene-based test statistic; p , adjusted p value for multiple testing; *, significant association after conservative Bonferroni correction.
Figure 2Manhattan plot of results of gene-based analysis. (a) Analytical plot in the additive model. (b) Analytical plot in the dominant model. (c) Analytical plot in the recessive model. The dashed red line shows the significant association threshold.