Literature DB >> 36227486

Mass Balance Imaging: A Phase Portrait Analysis for Characterizing Growth Kinetics of Biomolecular Condensates.

Jan Geisler1, Victoria Tianjing Yan1,2, Stephan Grill1,3,4, Arjun Narayanan5,6,7.   

Abstract

Biomolecular condensation has emerged as a key organizing principle governing the formation of membraneless cellular assemblies. Revealing the mechanism of formation of biomolecular condensates requires the quantitative examination of their growth kinetics. Here, we introduce mass balance imaging (MBI) as a general method to study compositional growth dynamics based on fluorescent images of multicomponent clusters. MBI allows the visualization and measurement of composition-dependent growth rates of biomolecular condensates and other assemblies. We provide a computational pipeline and demonstrate the applicability of our method by investigating cortical assemblies containing N-WASP (WSP-1) and F-actin that appear during oocyte cortex activation in C. elegans. In general, the method can be broadly implemented to identify interactions that underlie growth kinetics of multicomponent assemblies in vivo and in vitro.
© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Automated image analysis; Biomolecular condensates; Colocalization; Growth kinetics; Mass balance imaging; Membraneless organelles; Multicomponent clustering; Phase portrait analysis; Phase separation

Mesh:

Substances:

Year:  2023        PMID: 36227486     DOI: 10.1007/978-1-0716-2663-4_21

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  9 in total

1.  A surface contact microscope for the study of cell movements.

Authors:  E J AMBROSE
Journal:  Nature       Date:  1956-11-24       Impact factor: 49.962

2.  scikit-image: image processing in Python.

Authors:  Stéfan van der Walt; Johannes L Schönberger; Juan Nunez-Iglesias; François Boulogne; Joshua D Warner; Neil Yager; Emmanuelle Gouillart; Tony Yu
Journal:  PeerJ       Date:  2014-06-19       Impact factor: 2.984

Review 3.  Liquid-liquid phase separation in biology.

Authors:  Anthony A Hyman; Christoph A Weber; Frank Jülicher
Journal:  Annu Rev Cell Dev Biol       Date:  2014       Impact factor: 13.827

4.  Fiji: an open-source platform for biological-image analysis.

Authors:  Johannes Schindelin; Ignacio Arganda-Carreras; Erwin Frise; Verena Kaynig; Mark Longair; Tobias Pietzsch; Stephan Preibisch; Curtis Rueden; Stephan Saalfeld; Benjamin Schmid; Jean-Yves Tinevez; Daniel James White; Volker Hartenstein; Kevin Eliceiri; Pavel Tomancak; Albert Cardona
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

5.  TrackMate: An open and extensible platform for single-particle tracking.

Authors:  Jean-Yves Tinevez; Nick Perry; Johannes Schindelin; Genevieve M Hoopes; Gregory D Reynolds; Emmanuel Laplantine; Sebastian Y Bednarek; Spencer L Shorte; Kevin W Eliceiri
Journal:  Methods       Date:  2016-10-03       Impact factor: 3.608

Review 6.  ilastik: interactive machine learning for (bio)image analysis.

Authors:  Stuart Berg; Dominik Kutra; Thorben Kroeger; Christoph N Straehle; Bernhard X Kausler; Carsten Haubold; Martin Schiegg; Janez Ales; Thorsten Beier; Markus Rudy; Kemal Eren; Jaime I Cervantes; Buote Xu; Fynn Beuttenmueller; Adrian Wolny; Chong Zhang; Ullrich Koethe; Fred A Hamprecht; Anna Kreshuk
Journal:  Nat Methods       Date:  2019-09-30       Impact factor: 28.547

7.  Guiding self-organized pattern formation in cell polarity establishment.

Authors:  Peter Gross; K Vijay Kumar; Nathan W Goehring; Justin S Bois; Carsten Hoege; Frank Jülicher; Stephan W Grill
Journal:  Nat Phys       Date:  2018-12-03       Impact factor: 20.034

8.  Scanning STED-FCS reveals spatiotemporal heterogeneity of lipid interaction in the plasma membrane of living cells.

Authors:  Alf Honigmann; Veronika Mueller; Haisen Ta; Andreas Schoenle; Erdinc Sezgin; Stefan W Hell; Christian Eggeling
Journal:  Nat Commun       Date:  2014-11-20       Impact factor: 14.919

Review 9.  Evaluating phase separation in live cells: diagnosis, caveats, and functional consequences.

Authors:  David T McSwiggen; Mustafa Mir; Xavier Darzacq; Robert Tjian
Journal:  Genes Dev       Date:  2019-10-08       Impact factor: 11.361

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.