Literature DB >> 36215487

Origin recognition complex harbors an intrinsic nucleosome remodeling activity.

Sai Li1, Michael R Wasserman1, Olga Yurieva2, Lu Bai3,4, Michael E O'Donnell2, Shixin Liu1.   

Abstract

Eukaryotic DNA replication is initiated at multiple chromosomal sites known as origins of replication that are specifically recognized by the origin recognition complex (ORC) containing multiple ATPase sites. In budding yeast, ORC binds to specific DNA sequences known as autonomously replicating sequences (ARSs) that are mostly nucleosome depleted. However, nucleosomes may still inhibit the licensing of some origins by occluding ORC binding and subsequent MCM helicase loading. Using purified proteins and single-molecule visualization, we find here that the ORC can eject histones from a nucleosome in an ATP-dependent manner. The ORC selectively evicts H2A-H2B dimers but leaves the (H3-H4)2 tetramer on DNA. It also discriminates canonical H2A from the H2A.Z variant, evicting the former while retaining the latter. Finally, the bromo-adjacent homology (BAH) domain of the Orc1 subunit is essential for ORC-mediated histone eviction. These findings suggest that the ORC is a bona fide nucleosome remodeler that functions to create a local chromatin environment optimal for origin activity.

Entities:  

Keywords:  DNA replication; nucleosome; nucleosome remodeling; origin of replication; origin recognition complex

Mesh:

Substances:

Year:  2022        PMID: 36215487      PMCID: PMC9586268          DOI: 10.1073/pnas.2211568119

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  48 in total

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Journal:  EMBO J       Date:  2002-09-02       Impact factor: 11.598

Review 3.  The nucleosome family: dynamic and growing.

Authors:  Jordanka Zlatanova; Thomas C Bishop; Jean-Marc Victor; Vaughn Jackson; Ken van Holde
Journal:  Structure       Date:  2009-02-13       Impact factor: 5.006

4.  Replication Fork Activation Is Enabled by a Single-Stranded DNA Gate in CMG Helicase.

Authors:  Michael R Wasserman; Grant D Schauer; Michael E O'Donnell; Shixin Liu
Journal:  Cell       Date:  2019-07-25       Impact factor: 41.582

Review 5.  The H2A.Z-nuclesome code in mammals: emerging functions.

Authors:  Yolanda Colino-Sanguino; Susan J Clark; Fatima Valdes-Mora
Journal:  Trends Genet       Date:  2021-10-24       Impact factor: 11.639

6.  Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure.

Authors:  Nicolas M Berbenetz; Corey Nislow; Grant W Brown
Journal:  PLoS Genet       Date:  2010-09-02       Impact factor: 5.917

7.  An explanation for origin unwinding in eukaryotes.

Authors:  Lance D Langston; Michael E O'Donnell
Journal:  Elife       Date:  2019-07-08       Impact factor: 8.140

8.  Nonreciprocal and Conditional Cooperativity Directs the Pioneer Activity of Pluripotency Transcription Factors.

Authors:  Sai Li; Eric Bo Zheng; Li Zhao; Shixin Liu
Journal:  Cell Rep       Date:  2019-09-03       Impact factor: 9.423

9.  Mechanism of replication origin melting nucleated by CMG helicase assembly.

Authors:  Marta H Gross; Joana Sousa; Jacob S Lewis; Sarah S Henrikus; Julia F Greiwe; Andrea Nans; John F X Diffley; Alessandro Costa
Journal:  Nature       Date:  2022-06-15       Impact factor: 69.504

10.  Dinucleosome specificity and allosteric switch of the ISW1a ATP-dependent chromatin remodeler in transcription regulation.

Authors:  Saurabh K Bhardwaj; Solomon G Hailu; Lola Olufemi; Sandipan Brahma; Soumyadipta Kundu; Swetansu K Hota; Jim Persinger; Blaine Bartholomew
Journal:  Nat Commun       Date:  2020-11-20       Impact factor: 14.919

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