| Literature DB >> 36213831 |
Qingmin Chen1, Yi Qin2, Min Lin3, Zhao Li3, Weizhong Tang1.
Abstract
Background: Colorectal cancer is a digestive tract malignant tumor, ranking the second mortality and the third incidence cancer worldwide. The abnormal expression of NEAT1 is related to the occurrence and development of colorectal cancer. However, the specific mechanism of NEAT1 mediated-inflammatory pathway in the progression of colorectal cancer is still unclear.Entities:
Year: 2022 PMID: 36213831 PMCID: PMC9536976 DOI: 10.1155/2022/4088271
Source DB: PubMed Journal: J Oncol ISSN: 1687-8450 Impact factor: 4.501
Primer sequences.
| Gene name | Primer sequences(5′ to 3′) |
|---|---|
| IL34 | Forward: TCCGTGTTGTCCCTCTTGAATGC |
| Reverse: CACCTCACAGTCCTGCCAGTTTAG | |
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| VEGFA | Forward: AGAAGGAGGAGGGCAGAATCATCAC |
| Reverse: GGGCACACAGGATGGCTTGAAG | |
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| SPINK1 | Forward: TCCGTGTTGTCCCTCTTGAATGC |
| Reverse: CACCTCACAGTCCTGCCAGTTTAG | |
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| |
| S100A14 | Forward: CCCATCTCATGCCGAGCAACTG |
| Reverse: GCCTCTCCAGCTTCACACTCTTG | |
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| P4HA2 | Forward: CCAGGAACCAAGTACCAGGCAATG |
| Reverse: CTGCTCCATCCACAACACCGTATG | |
|
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| IFI6 | Forward: GCTGGTCTGCGATCCTGAATGG |
| Reverse: GAGATACTTGTGGGTGGCGTAGC | |
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| CCNE2 | Forward: AATACTGACTGCTGCTGCCTTGTG |
| Reverse: TACTGTCCCACTCCAAACCTGAGG | |
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| NEAT1 | Forward: TTTGTGCTTTGGAACCTTGCT |
| Reverse: TCAACGCCCCAAGTTATTTC | |
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| GAPDH | Forward: ACAGGGGAGGTGATAGCATT |
| Reverse: GACCAAAAGCCTTCATACATCTC | |
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| |
| IL1B | Forward: ATGAGAGCATCGAGCTTCAA |
| Reverse: TGAAGGAAAAGAAGGTGCTC | |
|
| |
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| Forward: GATTACTGCTCTGGCTCCTAG |
| Reverse: TTGCTGTTGAAGTCGCAGGAG | |
Figure 1NEAT1 is highly expressed in colorectal cancer and is associated with poor prognosis of patients. (a) Analysis of expression patterns of NEAT1 in cancer and normal tissues from TCGA dataset. (b) Expression of NEAT1 in different TNM stages of colorectal cancer. (c) Kaplan-Meier analysis of overall survival (OS) of CRC patients from TCGA dataset. (d) Kaplan-Meier analysis of disease free survival (RFS) of CRC patients from TCGA dataset.
Figure 2NEAT1 is highly expressed in colorectal cancer patient serum, tissues, and cells. (a) Relative expression of NEAT1 in serum of patients by qRT-PCR. (b) Relative expression of NEAT1 in CRC tissues by qRT-PCR. (c) Relative expression of NEAT1 in CRC cell lines and the normal colon epithelium cell line NCM460 by qRT-PCR. (d) Relative expression of NEAT1 in culture supernatant of CRC cell lines and the normal colon epithelium cell line NCM460 by qRT-PCR. ∗p < 0.05, ∗∗p < 0.01. The data are expressed as the mean ± S.D. of three independent experiments. Unpaired two-tailed Student's t test between two groups was applied.
Figure 3Knockdown NEAT1 suppresses the proliferation and migration of colorectal cancer cells. (a) Validation the knockdown efficacy of NEAT1 in HT29 cell line by qRT-PCR. (b) The proliferative capacity is valued by CCK-8 assay. (c) The proliferative capacity is detected by colony formation. (d) The ability of migration is represented by wound healing assay. Scale bar indicates 200 μm. (e) Cell apoptosis assay by flow cytometry of HT29 cell transfected with shRNA or shRNAEAT1. ∗p < 0.05, ∗∗p < 0.01, ∗∗∗p < 0.001. The data are expressed as the mean ± S.D. of three independent experiments. Unpaired two-tailed Student's t test between two groups was applied.
Figure 4RNA sequencing reveals that NEAT1 regulates colorectal cancer through inflammatory response. (a) The expression pattern of Pearson product-moment correlation coefficient of two groups. (b) Volcanic map was used to show the different genes between the two groups. (c) Hierarchical clustering was used to show the different genes between the two groups. (d) The differential genes of all comparison groups by two-way cluster analysis. (e) The heat map of different signal pathway genes expression. (f) KEGG enrichment analysis of the differential genes. (g) Relative expression of genes in CRC cell lines by qRT-PCR. ∗p < 0.05, ∗∗p < 0.01. The data are expressed as the mean ± S.D. of three independent experiments. Unpaired two-tailed Student's t test between two groups was applied.
Figure 5NEAT1 regulate inflammatory response in colorectal cancer. (a) Immunohistochemical (IHC) analysis of caspase-1 expression in colorectal cancer tissue. Scale bar indicates 200 μm. (b) The expression of IL1B in colorectal cancer tissue by qRT-PCR. (c) The expression of caspase-1 by Western blot. ∗∗p < 0.01. The data are expressed as the mean ± S.D. of three independent experiments. Unpaired two-tailed Student's t test between two groups was applied.
Figure 6Knockdown NEAT1 attenuates tumor growth and inflammation-related gene expression in-vivo. (a) The tumorigenesis of nude mice. (b) The picture of tumor tissues of two groups. (c) Measurements of tumor tissue size. (d) Relative expression of genes in tumor tissues by qRT-PCR. (e) H&E staining of tumor tissues. Scale bar indicates 200 μm. (f) The expression of Ki-67 in tumor tissues was analyzed by immunohistochemistry. Scale bar indicates 200 μm. ∗p < 0.05, ∗∗p < 0.01. The data are expressed as the mean ± S.D. of three independent experiments. Unpaired two-tailed Student's t test between two groups was applied.