Literature DB >> 36202442

Artificial Intelligence for Radiation Oncology Applications Using Public Datasets.

Kareem A Wahid1, Enrico Glerean2, Jaakko Sahlsten3, Joel Jaskari3, Kimmo Kaski3, Mohamed A Naser1, Renjie He1, Abdallah S R Mohamed1, Clifton D Fuller4.   

Abstract

Artificial intelligence (AI) has exceptional potential to positively impact the field of radiation oncology. However, large curated datasets - often involving imaging data and corresponding annotations - are required to develop radiation oncology AI models. Importantly, the recent establishment of Findable, Accessible, Interoperable, Reusable (FAIR) principles for scientific data management have enabled an increasing number of radiation oncology related datasets to be disseminated through data repositories, thereby acting as a rich source of data for AI model building. This manuscript reviews the current and future state of radiation oncology data dissemination, with a particular emphasis on published imaging datasets, AI data challenges, and associated infrastructure. Moreover, we provide historical context of FAIR data dissemination protocols, difficulties in the current distribution of radiation oncology data, and recommendations regarding data dissemination for eventual utilization in AI models. Through FAIR principles and standardized approaches to data dissemination, radiation oncology AI research has nothing to lose and everything to gain.
Copyright © 2022 The Author(s). Published by Elsevier Inc. All rights reserved.

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Year:  2022        PMID: 36202442      PMCID: PMC9587532          DOI: 10.1016/j.semradonc.2022.06.009

Source DB:  PubMed          Journal:  Semin Radiat Oncol        ISSN: 1053-4296            Impact factor:   5.421


  62 in total

1.  The Cancer Imaging Archive (TCIA): maintaining and operating a public information repository.

Authors:  Kenneth Clark; Bruce Vendt; Kirk Smith; John Freymann; Justin Kirby; Paul Koppel; Stephen Moore; Stanley Phillips; David Maffitt; Michael Pringle; Lawrence Tarbox; Fred Prior
Journal:  J Digit Imaging       Date:  2013-12       Impact factor: 4.056

2.  Head and neck tumor segmentation in PET/CT: The HECKTOR challenge.

Authors:  Valentin Oreiller; Vincent Andrearczyk; Mario Jreige; Sarah Boughdad; Hesham Elhalawani; Joel Castelli; Martin Vallières; Simeng Zhu; Juanying Xie; Ying Peng; Andrei Iantsen; Mathieu Hatt; Yading Yuan; Jun Ma; Xiaoping Yang; Chinmay Rao; Suraj Pai; Kanchan Ghimire; Xue Feng; Mohamed A Naser; Clifton D Fuller; Fereshteh Yousefirizi; Arman Rahmim; Huai Chen; Lisheng Wang; John O Prior; Adrien Depeursinge
Journal:  Med Image Anal       Date:  2021-12-25       Impact factor: 8.545

3.  Mitigating Implicit Bias in Radiation Oncology.

Authors:  Dayssy Alexandra Diaz; Gita Suneja; Reshma Jagsi; Parul Barry; Charles R Thomas; Curtiland Deville; Karen Winkfield; Malika Siker; Terri Bott-Kothari
Journal:  Adv Radiat Oncol       Date:  2021-06-24

4.  Quantitative Imaging Network: Data Sharing and Competitive AlgorithmValidation Leveraging The Cancer Imaging Archive.

Authors:  Jayashree Kalpathy-Cramer; John Blake Freymann; Justin Stephen Kirby; Paul Eugene Kinahan; Fred William Prior
Journal:  Transl Oncol       Date:  2014-02-01       Impact factor: 4.243

5.  Free DICOM de-identification tools in clinical research: functioning and safety of patient privacy.

Authors:  K Y E Aryanto; M Oudkerk; P M A van Ooijen
Journal:  Eur Radiol       Date:  2015-06-03       Impact factor: 5.315

Review 6.  The big data effort in radiation oncology: Data mining or data farming?

Authors:  Charles S Mayo; Marc L Kessler; Avraham Eisbruch; Grant Weyburne; Mary Feng; James A Hayman; Shruti Jolly; Issam El Naqa; Jean M Moran; Martha M Matuszak; Carlos J Anderson; Lynn P Holevinski; Daniel L McShan; Sue M Merkel; Sherry L Machnak; Theodore S Lawrence; Randall K Ten Haken
Journal:  Adv Radiat Oncol       Date:  2016-10-13

7.  Machine Learning Applications in Head and Neck Radiation Oncology: Lessons From Open-Source Radiomics Challenges.

Authors:  Hesham Elhalawani; Timothy A Lin; Stefania Volpe; Abdallah S R Mohamed; Aubrey L White; James Zafereo; Andrew J Wong; Joel E Berends; Shady AboHashem; Bowman Williams; Jeremy M Aymard; Aasheesh Kanwar; Subha Perni; Crosby D Rock; Luke Cooksey; Shauna Campbell; Pei Yang; Khahn Nguyen; Rachel B Ger; Carlos E Cardenas; Xenia J Fave; Carlo Sansone; Gabriele Piantadosi; Stefano Marrone; Rongjie Liu; Chao Huang; Kaixian Yu; Tengfei Li; Yang Yu; Youyi Zhang; Hongtu Zhu; Jeffrey S Morris; Veerabhadran Baladandayuthapani; John W Shumway; Alakonanda Ghosh; Andrei Pöhlmann; Hady A Phoulady; Vibhas Goyal; Guadalupe Canahuate; G Elisabeta Marai; David Vock; Stephen Y Lai; Dennis S Mackin; Laurence E Court; John Freymann; Keyvan Farahani; Jayashree Kaplathy-Cramer; Clifton D Fuller
Journal:  Front Oncol       Date:  2018-08-17       Impact factor: 6.244

8.  NCI Imaging Data Commons.

Authors:  Andrey Fedorov; William J R Longabaugh; David Pot; David A Clunie; Steve Pieper; Hugo J W L Aerts; André Homeyer; Rob Lewis; Afshin Akbarzadeh; Dennis Bontempi; William Clifford; Markus D Herrmann; Henning Höfener; Igor Octaviano; Chad Osborne; Suzanne Paquette; James Petts; Davide Punzo; Madelyn Reyes; Daniela P Schacherer; Mi Tian; George White; Erik Ziegler; Ilya Shmulevich; Todd Pihl; Ulrike Wagner; Keyvan Farahani; Ron Kikinis
Journal:  Cancer Res       Date:  2021-06-15       Impact factor: 12.701

Review 9.  Disruptive and avoidable: GDPR challenges to secondary research uses of data.

Authors:  David Peloquin; Michael DiMaio; Barbara Bierer; Mark Barnes
Journal:  Eur J Hum Genet       Date:  2020-03-02       Impact factor: 5.351

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