Sule Atahan-Evrenk1. 1. Faculty of Medicine, TOBB University of Economics and Technology, Sogutozu Cd No. 43 Sogutozu, Ankara06560, Turkey.
Abstract
Zinc-complexed porphyrin and chlorophyll derivatives form functional aggregates with remarkable photophysical and optoelectronic properties. Understanding the type and strength of intermolecular interactions between these molecules is essential for designing new materials with desired morphology and functionality. The dimer interactions of a molecular set composed of porphyrin derivatives obtained by substitutional changes starting from free-base porphyrin is studied. It is found that the B97M-rV/def2-TZVP level of theory provides a good compromise between the accuracy and cost to get the dimer geometries and interaction energies (IEs). The neglect of the relaxation energy due to the change in the monomer configurations upon complex formation causes a more significant error than the basis set superposition error. The metal complexation increases the binding energy by about -6 to -8 kcal/mol, and the introduction of keto and hydroxy groups further stabilizes the dimers by about -20 kcal/mol. Although the saturation of one of the pyrrol double bonds does not change the IE, the addition of R groups increases it.
Zinc-complexed porphyrin and chlorophyll derivatives form functional aggregates with remarkable photophysical and optoelectronic properties. Understanding the type and strength of intermolecular interactions between these molecules is essential for designing new materials with desired morphology and functionality. The dimer interactions of a molecular set composed of porphyrin derivatives obtained by substitutional changes starting from free-base porphyrin is studied. It is found that the B97M-rV/def2-TZVP level of theory provides a good compromise between the accuracy and cost to get the dimer geometries and interaction energies (IEs). The neglect of the relaxation energy due to the change in the monomer configurations upon complex formation causes a more significant error than the basis set superposition error. The metal complexation increases the binding energy by about -6 to -8 kcal/mol, and the introduction of keto and hydroxy groups further stabilizes the dimers by about -20 kcal/mol. Although the saturation of one of the pyrrol double bonds does not change the IE, the addition of R groups increases it.
Metalloporphyrins are ubiquitous in light-harvesting
organisms.[1] Because of their extraordinary
photophysical
and optoelectronic properties, synthetic analogues that mimic these
systems draw interest with potential applications in solar cells,
sensors, or photodynamic therapy.[2−5] One of the systems that inspired a myriad
of work is the self-assembled supramolecular structures of bacteriochlorophylls
(BChls), which form highly efficient antennae to capture light without
a protein scaffold to hold the structures together.[6−8] Replacing the
central magnesium atom in BChl c with zinc has been
a rewarding synthetic strategy to increase the stability of the metal
complexes.[3] Moreover, by chemical modifications
of the structures, their self-assembly processes and morphologies
can be controlled.[9]Like their BChl
counterparts, zinc-chlorins have rich intermolecular
interaction types: π–π stacking, H-bonding, and
metal–ligand.[10] An accurate description
of intermolecular interactions is crucial for understanding the forces
under which the supramolecular aggregates form.[11] Such descriptions also provide the necessary benchmark
for improving the available force fields.[12] However, the studies on the intermolecular interactions governing
the dimer formation of these zinc-porphyrins are scarce. Previously,
Kuznetsov[13] analyzed ground-state geometries
of Zn-porphyrin dimers and found good agreement with the experimental
crystal structure. To the best of our knowledge, the relative importance
of different types of interactions and the effect of the substitutions
on the interaction energy (IE) strength are not known.Here,
for the first time, we present a systematic study of the
IE in zinc-porphyrin complexes with increasing structural complexity
so that the effect of substitutions on the dimer IEs is quantified.
We used semiempirical, density functional, and symmetry-adapted perturbation
methods to find a good balance of cost and accuracy. Moreover, the
types of intermolecular interactions are evaluated using energy decomposition
analysis based on the symmetry-adapted perturbation theory (SAPT).A set of compounds starting from the simplest free-base porphyrin
to more complex substituted Zn-chlorins are studied (Figure ). Although the focus is on
the metal complexed structures, the free-base porphyrin (0) is included as a reference. Molecule 1 is a highly
symmetrical Zn(II)-porphyrin for which an experimental crystal structure
is available.[14] In molecule 2 (Zn-chlorin), the 17–18 bond is saturated, and hence, there
are 20 π electrons. Molecule 3, similar to BChl c, has a hydroxy group attached to the 31 position,
and the 13th, 14th, and 15th carbons are a part of a cyclopentenone.
Molecule 4 has all of the methyl and ethyl group substitutions
seen in BChl. This setup makes it possible to distinguish various
groups’ chemical and sterical contributions to the dimer IEs.
Figure 1
Molecules
studied in this work.
Molecules
studied in this work.
Methods
For van der Waals complexes, the geometry relaxation
upon complexation
is small, changes in the interatomic distances are usually less than
10–2 Å. Hence, the dimer IEs can be calculated
with frozen monomer geometries. However, the amount of geometrical
relaxation changes from one method to the other among the methods
used here. For example, for some of the semiempirical methods, monomer
interatomic distances change as much as 10–1 Å
upon dimer formation. In addition, unlike van der Waals complexes,
the dimers studied have metal–ligand interactions with distances
<3 Å. Therefore, both the binding energy (BE) and IE are calculated.The BE, which is the total dimer energy with respect to the optimized
monomer asymptote isThe IEs for the dimers are calculated
as followsHere, the monomer energies for their
geometry in the dimer are
subtracted from the total dimer energy. The basis set superposition
error (BSSE) correction is obtained by the counterpoise method of
Boys and Bernardi.[15]The performance
of the density functional theory (DFT) methods
is investigated for a number of functionals. The long-range corrected
functional ωB97M-V[16] performed better
than many others for a large number of data points.[16] Moreover, together with the def2-TZVP basis set,[17] it described the chemistry of transition metal
complexes successfully.[18] For molecule 1, the results from the ωB97M-V functional is compared
with the results from other density functionals from different rungs.
These are B97-D3[19] from rung 1, TPSS-D3(BJ)[20,21] and B97M-rV[22] from rung 2, M06-2X[23] with and without -D3 dispersion, MN15,[24] ωB97X-D,[25] ωB97X-D3,[26] and ωB97X-V[27] from rung 3.In addition, as low-cost alternatives to the
methods mentioned
above, the three corrections composite methods B97-3c[28] and PBEh-3c[29] and semiempirical
methods DFTB3-D4[30,31] and GFN2-xTB[32] are investigated. B97-3c is a low-cost variant of B97-D
that provides dispersion and avoids basis set errors with an optimized
triple zeta basis (mTZVP). PBEh-3c yields geometries that are close
to MP2/TZ accuracies with a fraction of the computational expense.
DFTB3-D4 is a tight-binding approach that is also suitable for solid-state
structure calculations. GFN2-xTB is also a semiempirical tight-binding
method with multipole electrostatics and dispersion, which shows promise
in the optimization of large aggregates and complexes of transition
metals.An essential technique for analyzing the noncovalent
interactions
is the SAPT.[33] The SAPT IE is a collection
of the electrostatic, exchange, induction, and dispersion components.
Within the SAPT formulation, under the assumption that intermolecular
forces are much weaker than the intramolecular covalent interactions,
the distortions in the geometry of a molecule in the presence of another
one could be assumed negligible. Then, the IE is calculated as a perturbation
in the monomer basis. If all of the higher-order terms in the perturbation
expansion are included, it is possible to achieve accuracy close to
that of CCSD(T). However, the standard level expansion (SAPT2) scales
similarly to CCSD(T), ≈N7. So instead,
here, the SAPT(DFT)[34] method together with
the density-fitting approximation with frozen core orbitals[35] is used (the grac shift: 0.2498). Unfortunately,
the def2-TZVP basis could be used only for molecules 0–2 due to the large basis set size and memory limitations (5478 basis
functions for molecule 3).The DFT calculations
are performed as implemented in Q-Chem 5.3[36] with BrianQC 1.1[37] as the GPU interface.
The DFTB3 method with 3ob-3-1 Slater–Koster
parameters[38,39] (Hubbard derivatives: Zn = −0.03,
O = −0.1575, N = −0.1535, C = −0.1492, and H
= −0.1857) and with D4 dispersion (a1 = 0.5523240, a2 = 4.3537076,
s6 = 1, s8 = 0.6635015, and s9 = 1) is used as implemented in the
DFTB+[40] package. For GFN2-xTB, the xTB
code,[41] for B97-3c and PBEh-3c methods,
ORCA,[42] and for SAPT(DFT), Psi4[43] programs are used. The molecular visualizations
are performed using VMD.[44]
Results and Discussion
To benchmark the accuracy of
the computational methods, we first
focus on the available Zn(II) porphyrin crystal structures.[14] Two crystal structures with P1̅ and P21/c symmetries
are available, both of which feature parallel displaced molecular
packing in the form of dimer and trimers due to strong π–π
stacking interactions. The monomers are relatively close-packed, with
the distances between the planes being about 3.2 Å, which are
shorter than what was reported for dimers of free-base porphyrin (3.4
Å),[45] and this perhaps is a result
of the interaction of the metal atom with the nitrogen of the pyrrole
ring in the neighboring monomer. This coordinative interaction pulls
the metal off-center and closer to the other monomer, doming the N–Zn–N
angles to 172–174°. The highly symmetric gas-phase structure
of Zn-porphyrin (D4)
is no longer in the crystal due to intermolecular interactions. For
example, there is an asymmetry in the intramolecular Zn–N bond
distances.First, we optimized the dimer structure extracted
from the P21/c crystal[14] by the ωB97M-V[16] method
using the def2 basis family.[17] To make
sure that the BSSE does not lead to an artificially high IE, we performed
the dimer geometry optimization with def2-SVP, -TZVP, and -QZVP bases.[17] The difference in the IEs for triple and quadrupole
zeta bases is small (Table ). This finding confirms the results of earlier studies, which
showed that the def2-TZVP basis is reliable without the counterpoise
correction.[18,46]
Table 1
BE and Some of the Geometrical Features
for the Monomer and Dimer Optimized at the ωB97M-V Level of
Theory with Karlsruhe Basis Sets (kcal/mol) [m: Monomer; d: Dimer;
Prime Indicates the Atoms of the other Monomer in the Dimer; “-”
Indicates the Minimum and Maximum Distances; and All Distances Are
in Angstrom (Å)]
method
BE
Zn–N (m)
Zn–N (d)
Zn–N′
Zn–Zn′
N–Zn–N (deg)
def2-SVP
–41.6
2.05
2.05–2.10
2.58
3.10
165
def2-TZVP
–30.2
2.04
2.04–2.06
2.84
3.35
170
def2-QZVP
–29.2
2.04
2.04–2.06
2.89
3.38
171
experimental
-
2.03–2.05
2.97
3.54
171
The BSSE in the IE for the dimer optimized at the
ωB97M-V/def2-TZVP
level of theory is also calculated (Table ). As expected, the larger the basis set,
the smaller the error. The BSSE with def2-TZVP is approximately 2
kcal/mol. Should the BSSE be assumed to be similar for both the BE
and IE calculations, the difference between the IE and BE is the geometry
relaxation energy due to the geometrical deformation of the monomers
in the dimer. Hence, the relaxation energy is approximately 3 kcal/mol
compared to 2 kcal/mol BSSE. Therefore, ignoring the monomer geometry
relaxation upon complex formation may not be justifiable if high accuracy
is necessary.
Table 2
IE, BSSE-Corrected IE (IEc), and BSSE Corrections for the Dimer Geometry Optimized at the ωB97M-V/def2-TZVP
Level of Theory (kcal/mol)
basis
IE
IEc
BSSE
def2-SVP
–43.3
–30.7
12.6
def2-TZVP
–33.2
–31.3
1.9
def2-QZVP
–32.1
–31.6
0.5
Overall, the computed geometries show a good agreement
with the
crystal structures (Table ). Note that only the shortest Zn–N′ distances
and the smallest N–Zn–N angles are reported in the tables.
Similar to the crystal structure, the monomer is no longer symmetrical;
there is a range of bond lengths and angles for the molecules in the
dimer. For example, the intramolecular Zn–N distances vary
in the range of 2.03–2.05 Å. In addition, there is a sufficient
overlap of the optimized geometry for the dimer with the initial geometry
extracted from the crystal. The high computational cost of using a
quadruple-zeta basis is not justified since it does not significantly
improve the geometry or the IE.The geometry and BE of the dimer
(molecule 1) obtained
using ωB97M-V/def2-TZVP is compared with those obtained using
other methods in Figure and Table . All
of the DFT results are approximately within 3 kcal/mol of each other.
Previously, Kuznetsov studied the Zn-porphyrin dimer geometry using
ωB97XD (Grimme’s D2 dispersion model) with the def2-TZVP
basis set and reported a BE in the same range (−27.3 kcal/mol)
as that for molecule 1.[13]
Figure 2
BEs for
the dimer (1) obtained using various methods;
all DFT calculations are performed with the def2-TZVP basis set.
Table 3
BEs for the Dimer (1)
Obtained Using Various Methods in kcal/mol [m: Monomer, d: Dimer,
and Prime Indicates the Atoms of the other Monomer in the Dimer; All
Distances Are in Angstrom (Å); and DFT Calculations Are Performed
with the def2-TZVP Basis Set]
method
BE
Zn–N (m)
Zn–N (d)
Zn–N′
Zn–Zn′
N–Zn–N (deg)
B97-D3
–30.2
2.06
2.06–2.08
2.96
3.45
172
TPSS-D3(BJ)
–27.6
2.05
2.05–2.08
2.70
3.21
168
B97M-rV
–27.4
2.04
2.03–2.05
2.92
3.39
171
M06-2X
–26.8
2.05
2.03–2.08
2.78
3.29
169
MN15
–29.5
2.04
2.04–2.07
2.74
3.22
168
M06-2X-D3
–30.7
2.05
2.03–2.08
2.78
3.29
169
ωB97X-D
–30.1
2.04
2.04–2.05
3.06
3.52
174
ωB97X-D3
–26.5
2.04
2.04–2.05
3.16
3.63
175
ωB97X-V
–26.9
2.04
2.04–2.06
3.01
3.50
173
ωB97M-V
–30.2
2.04
2.04–2.06
2.84
3.35
170
B97-3c
–27.9
2.05
2.05–2.07
2.85
3.36
170
PBEh-3c
–25.1
2.04
2.04–2.07
2.76
3.28
169
GFN2-xTB
–35.6
2.03
2.03–2.07
2.42
2.89
163
DFTB-D4
–28.9
2.08
2.07–2.18
2.53
3.13
165
experimental
2.03–2.05
2.97
3.54
171
BEs for
the dimer (1) obtained using various methods;
all DFT calculations are performed with the def2-TZVP basis set.The approximate methods provide good accuracy while
reducing the
computational cost significantly (Table ). The “-3c” methods provide
a good geometry, whereas the GFN2-xTB optimization brings the monomers
too close together, reflected as the over-doming in the N–Zn–N
angle, resulting in a larger IE. One notable feature in DFTB-D4 is
the intramolecular Zn–N distances being too far. Overall, the
parameterized methods provide good accuracy for geometry optimization.
Most of the IEs lie between −25 and −30 kcal/mol, the
GFN2-xTB being the most significant deviation with a value of −35
kcal/mol. As a result of this comparison, to study the rest of the
molecules, the following methods are chosen: B97M-rV, B97-D3, B97-3c,
GFN2-xTB, and DFTB-D4.For molecule 2, three parallel-stacked
initial structures,
which were defined according to the alignment of the saturated bond
(i.e., θ = 0° when the saturated bond coincides in the
two dimers) were used. The optimized geometries are close to these
initial structures, but with parallel displacement similar to that
in molecule 1 (Figure ).
Figure 3
Geometries optimized at the level of B97M-rV/def2-TZVP
for the
dimers for molecule 2.
Geometries optimized at the level of B97M-rV/def2-TZVP
for the
dimers for molecule 2.The optimized geometries at various levels of theory
have similar
BEs (Table ). DFTB-D4
and GFN2-xTB predictions for the intermolecular Zn–Zn′
and N–Zn′ distances are slightly shorter, and the N–Zn–N
angles have more doming. The GFN2-xTB BE is about 5 kcal/mol larger
than the B97M-rV value, similar to molecule 1. Overall,
the parameterized methods compare remarkably well with the B97M-rV/def2-TZVP
level of calculations with a much lower cost. The similarity of the
BE for rotated configurations of 2 indicates that a “sombrero
hat” type of a potential energy surface is at play, as suggested
previously by Mück-Lichtenfeld and Grimme for free-base porphyrin.[46]
Table 4
BEs (kcal/mol) for Dimers of Molecule 2 for Three Different Orientations [m: Monomer, d: Dimer,
and Prime Indicates the Atoms of the Other Monomer in the Dimer; All
Distances Are in Angstrom (Å); and DFT Calculations Are Performed
with the def2-TZVP Basis Set]
method
BE
Zn–N (m)
Zn–N (d)
Zn–N′
Zn–Zn′
N–Zn–N (deg)
B97-D3
0°
–29.2
2.03–2.15
2.03–2.18
2.96
3.50
171
90°
–31.1
2.03–2.15
2.04–2.14
3.12
3.50
175
180°
–30.7
2.03–2.15
2.04–2.16
3.19
3.58
175
B97M-rV
0°
–25.1
2.01–2.12
2.01–2.15
2.90
3.41
171
90°
–26.9
2.01–2.12
2.02–2.10
3.07
3.42
174
180°
–26.6
2.01–2.12
2.01–2.13
3.15
3.50
174
B97-3c
0°
–27.7
2.02–2.13
2.03–2.13
2.81
3.34
169
90°
–28.5
2.02–2.13
2.03–2.12
3.05
3.44
173
180°
–27.4
2.02–2.13
2.02–2.14
3.14
3.57
175
DFTB-D4
0°
–27.8
2.05–2.19
2.05–2.29
2.50
3.16
164
90°
–27.8
2.05–2.19
2.05–2.28
2.57
3.17
166
180°
–26.6
2.05–2.19
2.04–2.28
2.61
3.22
166
GFN2-xTB
0°
–32.8
2.01–2.11
2.02–2.16
2.42
2.92
162
90°
–33.4
2.01–2.11
2.02–2.11
2.57
2.90
165
180°
–31.1
2.01–2.11
2.02–2.14
2.63
2.93
166
Molecule 3 includes both a hydroxy group
and a ketone
group; hence, in addition to π–π stacking, H-bonding
and Zn–O interactions play a role in dimer formation. A total
of six dimer geometries were used as the initial structures (Figure ). These were the
four parallel-stacked dimers, rotated θ = 0, 90, 180, and 270°
degrees around the Zn–Zn′ axis, and two parallel-displaced
geometries (initially displaced by about 6 Å) so that either
hydroxy or keto oxygen on one monomer can interact with the metal
atom on the other monomer. The 180° dimer with the double hydrogen
bond has the strongest binding across the methods.
Figure 4
Initial geometries for
the dimers for molecule 3.
Initial geometries for
the dimers for molecule 3.Again, optimized geometries of these dimers formed
by rotation
are all slightly sideways displaced, similar to molecules 1 and 2. All of the final geometries are closer to the
initial structure, indicating that the basin for the minima on the
potential energy surface is wide. Consistently across the methods,
the higher BE is for the dimer in which the θ = 180° rotation
allows for two hydrogen bonds. As expected from H-bonding, the IE
of these dimers is higher by about 3–4 kcal/mol per bond. The
θ = 0° configuration has a weaker hydrogen bond, as reflected
in the O–O distances in Table .
Table 5
BEs (kcal/mol) and Geometric Parameters
for Dimers of Molecule 3 for Different Initial Orientations
[m: Monomer, d: Dimer, and Prime Indicates the Atoms of the Other
Monomer in the Dimer; All Distances Are in Angstrom (Å); and
DFT Calculations Are Performed with the def2-TZVP Basis Set]
method
BE
Zn–N (m)
Zn–N (d)
Zn–Zn′
Zn–N′
N–Zn–N (deg)
H-bond
OH–O
Zn–O
B97-D3
0°
–39.0
1.99–2.21
1.99–2.20
3.42
2.90
172
1
2.95
90°
–38.1
1.99–2.21
1.99–2.23
3.48
2.94
172
180°
–48.3
1.99–2.21
1.99–2.19
3.45
2.96
172
2
2.87, 2.87
270°
–39.8
1.99–2.21
1.99–2.23
3.47
2.95
171
disp. 0°
–26.5
1.99–2.21
2.00–2.21
6.92
169
2.29
disp. 180°
–28.9
1.99–2.21
2.01–2.20
6.94
167
2.29
B97M-rV
0°
–37.3
1.97–2.17
1.97–2.17
3.40
2.90
172
1
2.95
90°
–35.1
1.97–2.17
1.97–2.19
3.43
2.90
171
180°
–46.8
1.97–2.17
1.97–2.15
3.43
2.95
172
2
2.87, 2.87
270°
–36.4
1.97–2.17
1.97–2.19
3.40
2.93
170
disp. 0°
–17.9
1.97–2.17
1.98–2.17
6.81
165
2.24
disp. 180°
–19.6
1.97–2.17
1.99–2.16
6.87
167
2.24
B97-3c
0°
–35.2
1.98–2.19
1.99–2.20
3.30
2.71
168
1
2.96
90°
–31.8
1.98–2.19
1.98–2.19
3.37
3.03
172
180°
–44.1
1.98–2.19
1.99–2.18
3.35
2.80
169
2
2.88, 2.88
270°
–35.6
1.98–2.19
1.98–2.22
3.38
2.83
169
disp. 0°
–19.7
1.98–2.19
1.98–2.19
6.81
169
2.45
disp. 180°
–33.4
1.98–2.19
1.99–2.19
3.42
169
DFTB-D4
0°
–33.6
1.99–2.27
2.01–2.24
3.17
2.56
167
1
2.87
90°
–32.0
1.99–2.27
1.98–2.38
3.18
2.56
167
180°
–39.6
1.99–2.27
2.02–2.22
3.21
2.63
168
2
2.82, 2.82
270°
–32.4
1.99–2.27
2.01–2.24
3.17
2.52
163
disp. 0°
–31.3
1.99–2.27
2.02–2.23
7.03
163
2.21
disp. 180°
–33.4
1.99–2.27
2.02–2.23
6.95
164
2.24
GFN2-xTB
0°
–39.8
1.96–2.15
1.97–2.17
2.90
2.35
163
1
2.91
90°
–38.4
1.96–2.15
1.97–2.21
2.90
2.37
163
180°
–46.6
1.96–2.15
1.98–2.15
2.95
2.40
163
2
2.85, 2.85
270°
–38.6
1.96–2.15
1.97–2.22
2.86
2.41
162
disp. 0°
–40.3
1.96–2.15
1.96–2.16
6.99
167
2.11
disp. 180°
–40.1
1.96–2.15
1.97–2.14
6.93
170
2.24
The structure of the θ = 180° H-bonded
dimer with two
hydrogen bonds is similar to the structure crystalized by Barkigia
et al.[47] They observed that the dimers
of Zn pheoporphyrin d orient to form nonlinear hydrogen bonds, similar
to what we observed for molecule 3. (155° for the
dimer optimized at the B97M-rV/TZVP level of theory). In addition,
Barkigia et al. found that Zn–O distances in the complexes
are larger than 2.1 Å, which is also the case for the optimized
dimer geometries in Table .The displaced dimers have weaker π–π
interaction
and no hydrogen bonding, but they are stabilized by Zn–O metal–ligand
interaction. As a result, most of the optimized geometries are close
to the starting geometries except for the B97-3c optimization for
the displaced geometry with θ = 180° rotation, where the
monomers slip back into the close pack form where the Zn–Zn′
distance is 3.42 Å. Surprisingly, although the geometries for
displaced dimers optimized with the DFTB-D4 and GFN2-xTB methods are
similar to those obtained using the B97M-rV method, the BEs are very
large, almost the same as the BE for the face-to-face dimers. This
could be attributed to an overestimate of the metal–ligand
interactions; in the geometries optimized with tight binding methods,
the Zn–O and Zn–N′ bonds are shorter and N–Zn–N
angles are smaller (doming).Similar to the dimers of molecules 1 and 2, the strongest interaction holding the
molecule 3 dimers
together is the dispersion, and consequently, the potential energy
surfaces have wide minima. Therefore, any additional interaction such
as metal–ligand or hydrogen bond and steric effects can modify
the packing patterns, confirming the earlier findings of Mück-Lichtenfeld
and Grimme for free-base porphyrin.[46] These
authors noted that the IE differences between different motifs stem
from the electrostatics. The same is true for the dimers of molecule 3. A previous work on the dimers of Chlorophyll a also had a similar conclusion.[10]
IEs Depend on Substitutions
To quantify the effect
of substitutions on the IE, the dimers corresponding to the lowest
BE conformers of molecules 1–3 were analyzed using
the SAPT(DFT) method. In particular, we used the 90 and 180°
rotated dimers for molecules 2 and 3, respectively.
In addition, we included two more dimers: (1) the free-base porphyrin
dimer to investigate the effect of the Zn atom complexation (named
molecule 0. This is the most stable dimer configuration
where the dimers are rotated 90°). (2) The 180° rotated
dimer of molecule 4 to study the effect of the R-group
substitutions. Similar to dimer 3, this dimer has two hydrogen bonding.
The DFT and SAPT(DFT) IEs are compiled in Table . The decomposition of the IE into the components
reveals that metal complexation and polar and R-group substitutions
increase the IE (Figure ).
Table 6
IEs for the Dimers Optimized at the
B97M-rV/def2-TZVP Level of Theory (kcal/mol) (c Indicates
BSSE Correction)
B97M-rV
B97M-rVc
SAPT(DFT)
SAPT(DFT)
molecule
def2-TZVP
def2-TZVP
def2-SVP
def2-TZVP
0
–23.1
–21.6
–16.5
–23.9
1
–31.1
–29.2
–19.7
–29.7
2
–32.5
–30.2
–21.1
–30.1
3
–53.5
–50.0
–37.7
4
–62.3
–58.6
–42.7
Figure 5
Decomposition of the IE with the SAPT(DFT)/def2-SVP level of theory
for the dimers optimized at the B97M-rV/def2-TZVP level of theory.
Decomposition of the IE with the SAPT(DFT)/def2-SVP level of theory
for the dimers optimized at the B97M-rV/def2-TZVP level of theory.The BSSE-corrected IEs obtained using the B97M-rV/def2-TZVP
level
of theory are remarkably close to the SAPT(DFT)/def2-TZVP values for
molecules 1 and 2. On the other hand, although
the def2-SVP basis underestimates the IE, the overall trends are more
or less captured (Figure ). A comparison of the SAPT results with these two bases reveals
that the major error in def2-SVP stems from the inadequate description
of the dispersion interaction (Table ).
Figure 6
Comparison of IEs (kcal/mol) calculated with SAPT(DFT)
and B97M-rV
methods for the dimers optimized at the B97M-rV/def2-TZVP level of
theory.
Table 7
Decomposition of the IE (kcal/mol)
with the SAPT(DFT) Method for the Dimers Optimized at the B97M-rV/def2-TZVP
Level of Theory
SAPT/def2-SVP
elec.
exc.
ind.
disp.
0
–16.5
–6.9
22.9
–4.0
–28.6
1
–19.7
–15.3
34.7
–5.4
–33.7
2
–21.1
–16.6
36.1
–5.8
–34.7
3
–37.7
–37.4
57.0
–11.5
–45.9
4
–42.7
–43.0
69.7
–14.3
–55.2
Comparison of IEs (kcal/mol) calculated with SAPT(DFT)
and B97M-rV
methods for the dimers optimized at the B97M-rV/def2-TZVP level of
theory.For free-base porphyrin, Mück-Lichtenfeld and
Grimme reported
an IE value of −25 ± 3 kcal/mol. The values we obtained
with def2-TZVP are similar, namely, −22 and −24 kcal/mol
using DFT and SAPT methods, respectively.Metal binding increases
the dimer IEs by about −6 to −8
kcal/mol. We further analyzed the effect of metal binding in terms
of the SAPT(DFT)/def2-TZVP components for molecules 1 and 2 (Table ). Zn binding to the free-base porphyrin increases the electrostatics,
dispersion, induction, and exchange interactions by −10.7,
−8.5, −2.1, and 15.6 kcal/mol, respectively, resulting
in an overall stabilization of dimers by approximately −6 kcal/mol.
Furthermore, introducing a keto group and a hydroxy group further
stabilizes the dimers by about −20 kcal/mol.
Conclusions
Zinc binding in free-base porphyrin stabilizes
the dimer significantly.
Introducing the hydroxy and keto groups to the Zn-chlorin ring almost
doubles the IE compared to that of the free-base porphyrin. Interaction
surfaces for all parallel stacked dimers have mostly flat minima,
where the rotation does not significantly change the energies. These
flat interaction surfaces are perhaps the reason behind rich packing
patterns observed in experimentally produced aggregates. All complexes
are dispersion-bound, without which the BE would be positive. Although
the dispersion is the strongest force, due to the flat PES, mostly
electrostatics determines the geometries.Most methods we investigated
provide reasonably good geometries
and capture the IE for the face-to-face dimers, consistently predicting
the doubly hydrogen-bonded dimer as the lowest energy configuration.
However, GFN2-xTB and DFTB-D4 predict the IE for displaced dimers
to be as high as that for the face-to-face dimers, whereas in the
DFT methods, the IE is smaller for the displaced dimers, as expected
from the diminishing dispersion interactions. On the other hand, B97M-rV
performs comparably with SAPT(DFT) at the same basis set level. In
addition, the analysis showed that ignoring the geometry relaxation
causes a more significant error than the BSSE.Remarkable charge
and energy transport properties emerge only for
supramolecular aggregates. Therefore, understanding the molecular
interactions at the aggregate scale for various packing patterns is
underway in our laboratory.
Authors: B Hourahine; B Aradi; V Blum; F Bonafé; A Buccheri; C Camacho; C Cevallos; M Y Deshaye; T Dumitrică; A Dominguez; S Ehlert; M Elstner; T van der Heide; J Hermann; S Irle; J J Kranz; C Köhler; T Kowalczyk; T Kubař; I S Lee; V Lutsker; R J Maurer; S K Min; I Mitchell; C Negre; T A Niehaus; A M N Niklasson; A J Page; A Pecchia; G Penazzi; M P Persson; J Řezáč; C G Sánchez; M Sternberg; M Stöhr; F Stuckenberg; A Tkatchenko; V W-Z Yu; T Frauenheim Journal: J Chem Phys Date: 2020-03-31 Impact factor: 3.488