Literature DB >> 26589037

Parametrization and Benchmark of DFTB3 for Organic Molecules.

Michael Gaus1,2, Albrecht Goez3, Marcus Elstner1.   

Abstract

DFTB3 is a recent extension of the self-consistent-charge density-functional tight-binding method (SCC-DFTB) and derived from a third order expansion of the density functional theory (DFT) total energy around a given reference density. Being applied in combination with the parametrization of its predecessor (MIO), DFTB3 improves for hydrogen binding energies, proton affinities, and hydrogen transfer barriers. In the present study, parameters especially designed for DFTB3 are presented, and its performance is evaluated for small organic molecules focusing on thermochemistry, geometries, and vibrational frequencies from our own and several databases from literature. The new parameters remove significant overbinding errors, reduce errors for geometries of noncovalent interactions, and improve the overall performance.

Entities:  

Year:  2012        PMID: 26589037     DOI: 10.1021/ct300849w

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  109 in total

1.  Copper Oxidation/Reduction in Water and Protein: Studies with DFTB3/MM and VALBOND Molecular Dynamics Simulations.

Authors:  Haiyun Jin; Puja Goyal; Akshaya Kumar Das; Michael Gaus; Markus Meuwly; Qiang Cui
Journal:  J Phys Chem B       Date:  2015-12-17       Impact factor: 2.991

2.  Density functional tight binding: values of semi-empirical methods in an ab initio era.

Authors:  Qiang Cui; Marcus Elstner
Journal:  Phys Chem Chem Phys       Date:  2014-07-28       Impact factor: 3.676

Review 3.  Metal Ion Modeling Using Classical Mechanics.

Authors:  Pengfei Li; Kenneth M Merz
Journal:  Chem Rev       Date:  2017-01-03       Impact factor: 60.622

4.  Benchmarking density functional tight binding models for barrier heights and reaction energetics of organic molecules.

Authors:  Maja Gruden; Ljubica Andjeklović; Akkarapattiakal Kuriappan Jissy; Stepan Stepanović; Matija Zlatar; Qiang Cui; Marcus Elstner
Journal:  J Comput Chem       Date:  2017-07-24       Impact factor: 3.376

5.  A delocalized proton-binding site within a membrane protein.

Authors:  Steffen Wolf; Erik Freier; Klaus Gerwert
Journal:  Biophys J       Date:  2014-07-01       Impact factor: 4.033

6.  Nucleic acid reactivity: challenges for next-generation semiempirical quantum models.

Authors:  Ming Huang; Timothy J Giese; Darrin M York
Journal:  J Comput Chem       Date:  2015-05-06       Impact factor: 3.376

7.  On the hydrogen activation by frustrated Lewis pairs in the solid state: benchmark studies and theoretical insights.

Authors:  Lei Liu; Jan Gerit Brandenburg; Stefan Grimme
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2017-08-28       Impact factor: 4.226

8.  Perspective: Quantum mechanical methods in biochemistry and biophysics.

Authors:  Qiang Cui
Journal:  J Chem Phys       Date:  2016-10-14       Impact factor: 3.488

9.  Analysis of Density Functional Tight Binding with Natural Bonding Orbitals.

Authors:  Xiya Lu; Juan Duchimaza-Heredia; Qiang Cui
Journal:  J Phys Chem A       Date:  2019-08-15       Impact factor: 2.781

10.  QM/MM free energy simulations: recent progress and challenges.

Authors:  Xiya Lu; Dong Fang; Shingo Ito; Yuko Okamoto; Victor Ovchinnikov; Qiang Cui
Journal:  Mol Simul       Date:  2016-07-05       Impact factor: 2.178

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