Literature DB >> 36186087

Unsupervised Deep Learning Methods for Biological Image Reconstruction and Enhancement: An overview from a signal processing perspective.

Mehmet Akçakaya1, Burhaneddin Yaman1, Hyungjin Chung2, Jong Chul Ye2.   

Abstract

Recently, deep learning approaches have become the main research frontier for biological image reconstruction and enhancement problems thanks to their high performance, along with their ultra-fast inference times. However, due to the difficulty of obtaining matched reference data for supervised learning, there has been increasing interest in unsupervised learning approaches that do not need paired reference data. In particular, self-supervised learning and generative models have been successfully used for various biological imaging applications. In this paper, we overview these approaches from a coherent perspective in the context of classical inverse problems, and discuss their applications to biological imaging, including electron, fluorescence and deconvolution microscopy, optical diffraction tomography and functional neuroimaging.

Entities:  

Keywords:  Deep learning; biological imaging; image reconstruction; unsupervised learning

Year:  2022        PMID: 36186087      PMCID: PMC9523517          DOI: 10.1109/msp.2021.3119273

Source DB:  PubMed          Journal:  IEEE Signal Process Mag        ISSN: 1053-5888            Impact factor:   15.204


  10 in total

Review 1.  Content-aware image restoration for electron microscopy.

Authors:  Tim-Oliver Buchholz; Alexander Krull; Réza Shahidi; Gaia Pigino; Gáspár Jékely; Florian Jug
Journal:  Methods Cell Biol       Date:  2019-07-11       Impact factor: 1.441

2.  Self-supervised learning of physics-guided reconstruction neural networks without fully sampled reference data.

Authors:  Burhaneddin Yaman; Seyed Amir Hossein Hosseini; Steen Moeller; Jutta Ellermann; Kâmil Uğurbil; Mehmet Akçakaya
Journal:  Magn Reson Med       Date:  2020-07-02       Impact factor: 4.668

3.  Deep learning approach for Fourier ptychography microscopy.

Authors:  Thanh Nguyen; Yujia Xue; Yunzhe Li; Lei Tian; George Nehmetallah
Journal:  Opt Express       Date:  2018-10-01       Impact factor: 3.894

4.  Deep learning massively accelerates super-resolution localization microscopy.

Authors:  Wei Ouyang; Andrey Aristov; Mickaël Lelek; Xian Hao; Christophe Zimmer
Journal:  Nat Biotechnol       Date:  2018-04-16       Impact factor: 54.908

5.  Self-supervised Visual Feature Learning with Deep Neural Networks: A Survey.

Authors:  Longlong Jing; Yingli Tian
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2020-05-04       Impact factor: 6.226

6.  TomoGAN: low-dose synchrotron x-ray tomography with generative adversarial networks: discussion.

Authors:  Zhengchun Liu; Tekin Bicer; Rajkumar Kettimuthu; Doga Gursoy; Francesco De Carlo; Ian Foster
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2020-03-01       Impact factor: 2.129

7.  Deep-Learning Methods for Parallel Magnetic Resonance Imaging Reconstruction: A Survey of the Current Approaches, Trends, and Issues.

Authors:  Florian Knoll; Kerstin Hammernik; Chi Zhang; Steen Moeller; Thomas Pock; Daniel K Sodickson; Mehmet Akçakaya
Journal:  IEEE Signal Process Mag       Date:  2020-01-20       Impact factor: 12.551

8.  20-fold Accelerated 7T fMRI Using Referenceless Self-Supervised Deep Learning Reconstruction.

Authors:  Omer Burak Demirel; Burhaneddin Yaman; Logan Dowdle; Steen Moeller; Luca Vizioli; Essa Yacoub; John Strupp; Cheryl A Olman; Kamil Ugurbil; Mehmet Akcakaya
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2021-11

9.  Unsupervised content-preserving transformation for optical microscopy.

Authors:  Xinyang Li; Guoxun Zhang; Hui Qiao; Feng Bao; Yue Deng; Jiamin Wu; Yangfan He; Jingping Yun; Xing Lin; Hao Xie; Haoqian Wang; Qionghai Dai
Journal:  Light Sci Appl       Date:  2021-03-01       Impact factor: 17.782

10.  Tomographic reconstruction with a generative adversarial network.

Authors:  Xiaogang Yang; Maik Kahnt; Dennis Brückner; Andreas Schropp; Yakub Fam; Johannes Becher; Jan Dierk Grunwaldt; Thomas L Sheppard; Christian G Schroer
Journal:  J Synchrotron Radiat       Date:  2020-02-18       Impact factor: 2.616

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.