Literature DB >> 31326025

Content-aware image restoration for electron microscopy.

Tim-Oliver Buchholz1, Alexander Krull2, Réza Shahidi3, Gaia Pigino4, Gáspár Jékely3, Florian Jug5.   

Abstract

Multiple approaches to use deep neural networks for image restoration have recently been proposed. Training such networks requires well registered pairs of high and low-quality images. While this is easily achievable for many imaging modalities, e.g., fluorescence light microscopy, for others it is not. Here we summarize on a number of recent developments in the fast-paced field of Content-Aware Image Restoration (CARE), in particular, and the associated area of neural network training, more in general. We then give specific examples how electron microscopy data can benefit from these new technologies.
© 2019 Elsevier Inc. All rights reserved.

Keywords:  CARE; Deep learning; Electron microscopy; Image restoration

Mesh:

Year:  2019        PMID: 31326025     DOI: 10.1016/bs.mcb.2019.05.001

Source DB:  PubMed          Journal:  Methods Cell Biol        ISSN: 0091-679X            Impact factor:   1.441


  13 in total

1.  Molecular organization of the early stages of nucleosome phase separation visualized by cryo-electron tomography.

Authors:  Meng Zhang; César Díaz-Celis; Bibiana Onoa; Cristhian Cañari-Chumpitaz; Katherinne I Requejo; Jianfang Liu; Michael Vien; Eva Nogales; Gang Ren; Carlos Bustamante
Journal:  Mol Cell       Date:  2022-07-30       Impact factor: 19.328

2.  Unsupervised Deep Learning Methods for Biological Image Reconstruction and Enhancement: An overview from a signal processing perspective.

Authors:  Mehmet Akçakaya; Burhaneddin Yaman; Hyungjin Chung; Jong Chul Ye
Journal:  IEEE Signal Process Mag       Date:  2022-02-24       Impact factor: 15.204

3.  Elasticity of podosome actin networks produces nanonewton protrusive forces.

Authors:  Marion Jasnin; Jordan Hervy; Stéphanie Balor; Anaïs Bouissou; Amsha Proag; Raphaël Voituriez; Jonathan Schneider; Thomas Mangeat; Isabelle Maridonneau-Parini; Wolfgang Baumeister; Serge Dmitrieff; Renaud Poincloux
Journal:  Nat Commun       Date:  2022-07-04       Impact factor: 17.694

Review 4.  Electron microscopy of cardiac 3D nanodynamics: form, function, future.

Authors:  Peter Kohl; Joachim Greiner; Eva A Rog-Zielinska
Journal:  Nat Rev Cardiol       Date:  2022-04-08       Impact factor: 49.421

5.  ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation.

Authors:  J Jiménez de la Morena; P Conesa; Y C Fonseca; F P de Isidro-Gómez; D Herreros; E Fernández-Giménez; D Strelak; E Moebel; T O Buchholz; F Jug; A Martinez-Sanchez; M Harastani; S Jonic; J J Conesa; A Cuervo; P Losana; I Sánchez; M Iceta; L Del Cano; M Gragera; R Melero; G Sharov; D Castaño-Díez; A Koster; J G Piccirillo; J L Vilas; J Otón; R Marabini; C O S Sorzano; J M Carazo
Journal:  J Struct Biol       Date:  2022-06-02       Impact factor: 3.234

6.  Deep Learning-Based Denoising in High-Speed Portable Reflectance Confocal Microscopy.

Authors:  Jingwei Zhao; Manu Jain; Ucalene G Harris; Kivanc Kose; Clara Curiel-Lewandrowski; Dongkyun Kang
Journal:  Lasers Surg Med       Date:  2021-04-23

7.  Topaz-Denoise: general deep denoising models for cryoEM and cryoET.

Authors:  Tristan Bepler; Kotaro Kelley; Alex J Noble; Bonnie Berger
Journal:  Nat Commun       Date:  2020-10-15       Impact factor: 14.919

8.  Noise2Atom: unsupervised denoising for scanning transmission electron microscopy images.

Authors:  Feng Wang; Trond R Henninen; Debora Keller; Rolf Erni
Journal:  Appl Microsc       Date:  2020-10-20

9.  SARS-CoV-2 structure and replication characterized by in situ cryo-electron tomography.

Authors:  Steffen Klein; Mirko Cortese; Sophie L Winter; Moritz Wachsmuth-Melm; Christopher J Neufeldt; Berati Cerikan; Megan L Stanifer; Steeve Boulant; Ralf Bartenschlager; Petr Chlanda
Journal:  Nat Commun       Date:  2020-11-18       Impact factor: 14.919

10.  Enhancing the signal-to-noise ratio and generating contrast for cryo-EM images with convolutional neural networks.

Authors:  Eugene Palovcak; Daniel Asarnow; Melody G Campbell; Zanlin Yu; Yifan Cheng
Journal:  IUCrJ       Date:  2020-10-24       Impact factor: 4.769

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