Literature DB >> 36125749

Transposon Insertion Mutagenesis in Hyperthermophilic Crenarchaeon Sulfolobus islandicus.

Changyi Zhang1,2, Rachel J Whitaker3,4.   

Abstract

Transposon insertion mutagenesis is a forward genetic approach that has been widely utilized for genetic characterization of bacteria and single-celled eukaryotes, and its applications are being rapidly expanded into a few archaeal model organisms for gene function analysis. Previously, we developed a Tn5-based in vivo transposon insertion mutagenesis system in the hyperthermophilic crenarchaeon S. islandicucs M.16.4 and defined the essential gene set under laboratory growth conditions. In this chapter, we will mainly focus on presenting details regarding the generation of a near-saturating transposon insertion mutant library in this crenarchaeal model. We envision that the traditional transposon-based forward mutagenesis screening paired with next generation sequencing will greatly speed up the exploration of archaeal genomic features.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Archaea; Sulfolobus islandicus; Tn5 transposase; Transposon insertion library; random mutagenesis

Mesh:

Substances:

Year:  2022        PMID: 36125749     DOI: 10.1007/978-1-0716-2445-6_10

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  17 in total

1.  An improved transposon for the halophilic archaeon Haloarcula hispanica.

Authors:  W G Woods; K Ngui; M L Dyall-Smith
Journal:  J Bacteriol       Date:  1999-11       Impact factor: 3.490

2.  Tryptophan auxotrophs were obtained by random transposon insertions in the Methanococcus maripaludis tryptophan operon.

Authors:  Iris Porat; William B Whitman
Journal:  FEMS Microbiol Lett       Date:  2009-06-12       Impact factor: 2.742

3.  Genome-scale analysis of gene function in the hydrogenotrophic methanogenic archaeon Methanococcus maripaludis.

Authors:  Felipe Sarmiento; Jan Mrázek; William B Whitman
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-04       Impact factor: 11.205

4.  In vivo transposon mutagenesis of the methanogenic archaeon Methanosarcina acetivorans C2A using a modified version of the insect mariner-family transposable element Himar1.

Authors:  J K Zhang; M A Pritchett; D J Lampe; H M Robertson; W W Metcalf
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-15       Impact factor: 11.205

5.  Studying gene regulation in methanogenic archaea.

Authors:  Michael Rother; Christian Sattler; Tilmann Stock
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

6.  Construction of composite transposons for halophilic Archaea.

Authors:  M L Dyall-Smith; W F Doolittle
Journal:  Can J Microbiol       Date:  1994-11       Impact factor: 2.419

7.  Random mutagenesis of the hyperthermophilic archaeon Pyrococcus furiosus using in vitro mariner transposition and natural transformation.

Authors:  Natalia Guschinskaya; Romain Brunel; Maxime Tourte; Gina L Lipscomb; Michael W W Adams; Philippe Oger; Xavier Charpentier
Journal:  Sci Rep       Date:  2016-11-08       Impact factor: 4.379

8.  The essential genome of the crenarchaeal model Sulfolobus islandicus.

Authors:  Changyi Zhang; Alex P R Phillips; Rebecca L Wipfler; Gary J Olsen; Rachel J Whitaker
Journal:  Nat Commun       Date:  2018-11-21       Impact factor: 14.919

9.  Generation of comprehensive transposon insertion mutant library for the model archaeon, Haloferax volcanii, and its use for gene discovery.

Authors:  Saija Kiljunen; Maria I Pajunen; Kieran Dilks; Stefanie Storf; Mechthild Pohlschroder; Harri Savilahti
Journal:  BMC Biol       Date:  2014-12-09       Impact factor: 7.431

10.  Random mutagenesis of a hyperthermophilic archaeon identified tRNA modifications associated with cellular hyperthermotolerance.

Authors:  Izumi Orita; Ryohei Futatsuishi; Kyoko Adachi; Takayuki Ohira; Akira Kaneko; Keiichi Minowa; Miho Suzuki; Takeshi Tamura; Satoshi Nakamura; Tadayuki Imanaka; Tsutomu Suzuki; Toshiaki Fukui
Journal:  Nucleic Acids Res       Date:  2019-02-28       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.