Literature DB >> 36111849

Purification of Self-Assembled DNA Tetrahedra Using Gel Electrophoresis.

Akul Patel1, Vibhav Valsangkar1, Ken Halvorsen1, Arun Richard Chandrasekaran1.   

Abstract

DNA nanostructures have found applications in a variety of fields such as biosensing, drug delivery, cellular imaging, and computation. Several of these applications require purification of the DNA nanostructures once they are assembled. Gel electrophoresis-based purification of DNA nanostructures is one of the methods used for this purpose. Here, we describe a step-by-step protocol for a gel-based method to purify self-assembled DNA tetrahedra. With further optimization, this method could also be adapted for other DNA nanostructures.
© 2022 Wiley Periodicals LLC. Basic Protocol: Purification of self-assembled DNA tetrahedra. © 2022 Wiley Periodicals LLC.

Entities:  

Keywords:  DNA nanotechnology; DNA tetrahedra; gel electrophoresis; purification; self-assembly

Mesh:

Substances:

Year:  2022        PMID: 36111849      PMCID: PMC9494925          DOI: 10.1002/cpz1.560

Source DB:  PubMed          Journal:  Curr Protoc        ISSN: 2691-1299


  31 in total

1.  Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication.

Authors:  R P Goodman; I A T Schaap; C F Tardin; C M Erben; R M Berry; C F Schmidt; A J Turberfield
Journal:  Science       Date:  2005-12-09       Impact factor: 47.728

2.  Key experimental approaches in DNA nanotechnology.

Authors:  Nadrian C Seeman
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2002-08

Review 3.  Chemistries for DNA Nanotechnology.

Authors:  Mikael Madsen; Kurt V Gothelf
Journal:  Chem Rev       Date:  2019-02-04       Impact factor: 60.622

4.  Shear Dependent LC Purification of an Engineered DNA Nanoswitch and Implications for DNA Origami.

Authors:  Ken Halvorsen; Megan E Kizer; Xing Wang; Arun Richard Chandrasekaran; Maria Basanta-Sanchez
Journal:  Anal Chem       Date:  2017-05-08       Impact factor: 6.986

5.  Analyzing DNA Nanotechnology: A Call to Arms For The Analytical Chemistry Community.

Authors:  Divita Mathur; Igor L Medintz
Journal:  Anal Chem       Date:  2017-02-16       Impact factor: 6.986

6.  A High-Throughput Process for the Solid-Phase Purification of Synthetic DNA Sequences.

Authors:  Andrzej Grajkowski; Jacek Cieślak; Serge L Beaucage
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2017-06-19

Review 7.  DNA tetrahedron nanostructures for biological applications: biosensors and drug delivery.

Authors:  Nuli Xie; Shiyuan Liu; Xiaohai Yang; Xiaoxiao He; Jin Huang; Kemin Wang
Journal:  Analyst       Date:  2017-09-08       Impact factor: 4.616

8.  Recovery of intact DNA nanostructures after agarose gel-based separation.

Authors:  Gaëtan Bellot; Mark A McClintock; Chenxiang Lin; William M Shih
Journal:  Nat Methods       Date:  2011-03       Impact factor: 28.547

9.  Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra.

Authors:  Yu He; Tao Ye; Min Su; Chuan Zhang; Alexander E Ribbe; Wen Jiang; Chengde Mao
Journal:  Nature       Date:  2008-03-13       Impact factor: 49.962

10.  Cellular microRNA detection with miRacles: microRNA- activated conditional looping of engineered switches.

Authors:  Arun Richard Chandrasekaran; Molly MacIsaac; Paromita Dey; Oksana Levchenko; Lifeng Zhou; Madeline Andres; Bijan K Dey; Ken Halvorsen
Journal:  Sci Adv       Date:  2019-03-13       Impact factor: 14.136

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