Literature DB >> 36107335

Using FPbase: The Fluorescent Protein Database.

Talley J Lambert1.   

Abstract

FPbase is a database of fluorescent proteins and their characteristics and a set of online tools that facilitate searching the database and performing experiments with fluorescent probes. This chapter serves as a general reference for using and searching the database and a guide to some of the more commonly used tools including the spectra viewer, custom microscope pages, and FRET calculator. Important caveats when evaluating the data are also discussed.
© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Database; Fluorescent proteins; Spectra; Visualization

Mesh：

Substances：

Year:  2023        PMID： 36107335     DOI： 10.1007/978-1-0716-2667-2_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  20 in total

1.  Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells.

Authors:  David A Zacharias; Jonathan D Violin; Alexandra C Newton; Roger Y Tsien
Journal:  Science       Date:  2002-05-03       Impact factor: 47.728

Review 2.  FRET imaging.

Authors:  Elizabeth A Jares-Erijman; Thomas M Jovin
Journal:  Nat Biotechnol       Date:  2003-11       Impact factor: 54.908

3.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

Review 4.  Protein database searches using compositionally adjusted substitution matrices.

Authors:  Stephen F Altschul; John C Wootton; E Michael Gertz; Richa Agarwala; Aleksandr Morgulis; Alejandro A Schäffer; Yi-Kuo Yu
Journal:  FEBS J       Date:  2005-10       Impact factor: 5.542

Review 5.  A guide to choosing fluorescent proteins.

Authors:  Nathan C Shaner; Paul A Steinbach; Roger Y Tsien
Journal:  Nat Methods       Date:  2005-12       Impact factor: 28.547

6.  Optimization of fluorescent proteins.

Authors:  Daphne S Bindels; Joachim Goedhart; Mark A Hink; Laura van Weeren; Linda Joosen; Theodorus W J Gadella
Journal:  Methods Mol Biol       Date:  2014

Review 7.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

Review 8.  Resonance energy transfer: methods and applications.

Authors:  P Wu; L Brand
Journal:  Anal Biochem       Date:  1994-04       Impact factor: 3.365

9.  LDAF1 and Seipin Form a Lipid Droplet Assembly Complex.

Authors:  Jeeyun Chung; Xudong Wu; Talley J Lambert; Zon Weng Lai; Tobias C Walther; Robert V Farese
Journal:  Dev Cell       Date:  2019-11-07       Impact factor: 12.270

10.  Aequorea's secrets revealed: New fluorescent proteins with unique properties for bioimaging and biosensing.

Authors:  Gerard G Lambert; Hadrien Depernet; Guillaume Gotthard; Darrin T Schultz; Isabelle Navizet; Talley Lambert; Stephen R Adams; Albertina Torreblanca-Zanca; Meihua Chu; Daphne S Bindels; Vincent Levesque; Jennifer Nero Moffatt; Anya Salih; Antoine Royant; Nathan C Shaner
Journal:  PLoS Biol       Date:  2020-11-02       Impact factor: 8.029
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