Literature DB >> 36074116

QCforever: A Quantum Chemistry Wrapper for Everyone to Use in Black-Box Optimization.

Masato Sumita1,2, Kei Terayama1,3, Ryo Tamura1,2,4,5, Koji Tsuda1,4,5.   

Abstract

To obtain observable physical or molecular properties such as ionization potential and fluorescent wavelength with quantum chemical (QC) computation, multi-step computation manipulated by a human is required. Hence, automating the multi-step computational process and making it a black box that can be handled by anybody are important for effective database construction and fast realistic material design through the framework of black-box optimization where machine learning algorithms are introduced as a predictor. Here, we propose a Python library, QCforever, to automate the computation of some molecular properties and chemical phenomena induced by molecules. This tool just requires a molecule file for providing its observable properties, automating the computation process of molecular properties (for ionization potential, fluorescence, etc.) and output analysis for providing their multi-values for evaluating a molecule. Incorporating the tool in black-box optimization, we can explore molecules that have properties we desired within the limitation of QC computation.

Entities:  

Mesh:

Year:  2022        PMID: 36074116      PMCID: PMC9518232          DOI: 10.1021/acs.jcim.2c00812

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   6.162


  37 in total

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Journal:  Nature       Date:  2016-01-28       Impact factor: 49.962

4.  Ab initio quantum chemistry: methodology and applications.

Authors:  Richard A Friesner
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

5.  NWChem: Past, present, and future.

Authors:  E Aprà; E J Bylaska; W A de Jong; N Govind; K Kowalski; T P Straatsma; M Valiev; H J J van Dam; Y Alexeev; J Anchell; V Anisimov; F W Aquino; R Atta-Fynn; J Autschbach; N P Bauman; J C Becca; D E Bernholdt; K Bhaskaran-Nair; S Bogatko; P Borowski; J Boschen; J Brabec; A Bruner; E Cauët; Y Chen; G N Chuev; C J Cramer; J Daily; M J O Deegan; T H Dunning; M Dupuis; K G Dyall; G I Fann; S A Fischer; A Fonari; H Früchtl; L Gagliardi; J Garza; N Gawande; S Ghosh; K Glaesemann; A W Götz; J Hammond; V Helms; E D Hermes; K Hirao; S Hirata; M Jacquelin; L Jensen; B G Johnson; H Jónsson; R A Kendall; M Klemm; R Kobayashi; V Konkov; S Krishnamoorthy; M Krishnan; Z Lin; R D Lins; R J Littlefield; A J Logsdail; K Lopata; W Ma; A V Marenich; J Martin Del Campo; D Mejia-Rodriguez; J E Moore; J M Mullin; T Nakajima; D R Nascimento; J A Nichols; P J Nichols; J Nieplocha; A Otero-de-la-Roza; B Palmer; A Panyala; T Pirojsirikul; B Peng; R Peverati; J Pittner; L Pollack; R M Richard; P Sadayappan; G C Schatz; W A Shelton; D W Silverstein; D M A Smith; T A Soares; D Song; M Swart; H L Taylor; G S Thomas; V Tipparaju; D G Truhlar; K Tsemekhman; T Van Voorhis; Á Vázquez-Mayagoitia; P Verma; O Villa; A Vishnu; K D Vogiatzis; D Wang; J H Weare; M J Williamson; T L Windus; K Woliński; A T Wong; Q Wu; C Yang; Q Yu; M Zacharias; Z Zhang; Y Zhao; R J Harrison
Journal:  J Chem Phys       Date:  2020-05-14       Impact factor: 3.488

6.  Understanding the evolution of a de novo molecule generator via characteristic functional group monitoring.

Authors:  Takehiro Fujita; Kei Terayama; Masato Sumita; Ryo Tamura; Yasuyuki Nakamura; Masanobu Naito; Koji Tsuda
Journal:  Sci Technol Adv Mater       Date:  2022-06-01       Impact factor: 7.821

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Authors:  John J Irwin; Teague Sterling; Michael M Mysinger; Erin S Bolstad; Ryan G Coleman
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9.  Hunting for Organic Molecules with Artificial Intelligence: Molecules Optimized for Desired Excitation Energies.

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10.  PubChem in 2021: new data content and improved web interfaces.

Authors:  Sunghwan Kim; Jie Chen; Tiejun Cheng; Asta Gindulyte; Jia He; Siqian He; Qingliang Li; Benjamin A Shoemaker; Paul A Thiessen; Bo Yu; Leonid Zaslavsky; Jian Zhang; Evan E Bolton
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

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