Literature DB >> 32414274

NWChem: Past, present, and future.

E Aprà1, E J Bylaska1, W A de Jong2, N Govind1, K Kowalski1, T P Straatsma3, M Valiev1, H J J van Dam4, Y Alexeev5, J Anchell6, V Anisimov5, F W Aquino7, R Atta-Fynn8, J Autschbach9, N P Bauman1, J C Becca10, D E Bernholdt11, K Bhaskaran-Nair12, S Bogatko13, P Borowski14, J Boschen15, J Brabec16, A Bruner17, E Cauët18, Y Chen19, G N Chuev20, C J Cramer21, J Daily1, M J O Deegan22, T H Dunning23, M Dupuis9, K G Dyall24, G I Fann11, S A Fischer25, A Fonari26, H Früchtl27, L Gagliardi21, J Garza28, N Gawande1, S Ghosh29, K Glaesemann1, A W Götz30, J Hammond6, V Helms31, E D Hermes32, K Hirao33, S Hirata34, M Jacquelin2, L Jensen10, B G Johnson35, H Jónsson36, R A Kendall11, M Klemm6, R Kobayashi37, V Konkov38, S Krishnamoorthy1, M Krishnan19, Z Lin39, R D Lins40, R J Littlefield41, A J Logsdail42, K Lopata43, W Ma44, A V Marenich21, J Martin Del Campo45, D Mejia-Rodriguez46, J E Moore6, J M Mullin47, T Nakajima48, D R Nascimento1, J A Nichols11, P J Nichols49, J Nieplocha1, A Otero-de-la-Roza50, B Palmer1, A Panyala1, T Pirojsirikul51, B Peng1, R Peverati38, J Pittner52, L Pollack53, R M Richard54, P Sadayappan55, G C Schatz56, W A Shelton57, D W Silverstein58, D M A Smith6, T A Soares59, D Song1, M Swart60, H L Taylor61, G S Thomas1, V Tipparaju62, D G Truhlar21, K Tsemekhman63, T Van Voorhis64, Á Vázquez-Mayagoitia5, P Verma65, O Villa66, A Vishnu1, K D Vogiatzis67, D Wang68, J H Weare69, M J Williamson70, T L Windus71, K Woliński14, A T Wong72, Q Wu4, C Yang2, Q Yu73, M Zacharias74, Z Zhang75, Y Zhao76, R J Harrison77.   

Abstract

Specialized computational chemistry packages have permanently reshaped the landscape of chemical and materials science by providing tools to support and guide experimental efforts and for the prediction of atomistic and electronic properties. In this regard, electronic structure packages have played a special role by using first-principle-driven methodologies to model complex chemical and materials processes. Over the past few decades, the rapid development of computing technologies and the tremendous increase in computational power have offered a unique chance to study complex transformations using sophisticated and predictive many-body techniques that describe correlated behavior of electrons in molecular and condensed phase systems at different levels of theory. In enabling these simulations, novel parallel algorithms have been able to take advantage of computational resources to address the polynomial scaling of electronic structure methods. In this paper, we briefly review the NWChem computational chemistry suite, including its history, design principles, parallel tools, current capabilities, outreach, and outlook.

Year:  2020        PMID: 32414274     DOI: 10.1063/5.0004997

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  30 in total

1.  Compound Uptake into E. coli Can Be Facilitated by N-Alkyl Guanidiniums and Pyridiniums.

Authors:  Sarah J Perlmutter; Emily J Geddes; Bryon S Drown; Stephen E Motika; Myung Ryul Lee; Paul J Hergenrother
Journal:  ACS Infect Dis       Date:  2020-11-23       Impact factor: 5.084

2.  Quantum Chemistry Common Driver and Databases (QCDB) and Quantum Chemistry Engine (QCEngine): Automation and interoperability among computational chemistry programs.

Authors:  Daniel G A Smith; Annabelle T Lolinco; Zachary L Glick; Jiyoung Lee; Asem Alenaizan; Taylor A Barnes; Carlos H Borca; Roberto Di Remigio; David L Dotson; Sebastian Ehlert; Alexander G Heide; Michael F Herbst; Jan Hermann; Colton B Hicks; Joshua T Horton; Adrian G Hurtado; Peter Kraus; Holger Kruse; Sebastian J R Lee; Jonathon P Misiewicz; Levi N Naden; Farhad Ramezanghorbani; Maximilian Scheurer; Jeffrey B Schriber; Andrew C Simmonett; Johannes Steinmetzer; Jeffrey R Wagner; Logan Ward; Matthew Welborn; Doaa Altarawy; Jamshed Anwar; John D Chodera; Andreas Dreuw; Heather J Kulik; Fang Liu; Todd J Martínez; Devin A Matthews; Henry F Schaefer; Jiří Šponer; Justin M Turney; Lee-Ping Wang; Nuwan De Silva; Rollin A King; John F Stanton; Mark S Gordon; Theresa L Windus; C David Sherrill; Lori A Burns
Journal:  J Chem Phys       Date:  2021-11-28       Impact factor: 3.488

3.  Two-dimensional electronic-vibrational sum frequency spectroscopy for interactions of electronic and nuclear motions at interfaces.

Authors:  Gang-Hua Deng; Yuqin Qian; Tong Zhang; Jian Han; Hanning Chen; Yi Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-24       Impact factor: 11.205

4.  QCforever: A Quantum Chemistry Wrapper for Everyone to Use in Black-Box Optimization.

Authors:  Masato Sumita; Kei Terayama; Ryo Tamura; Koji Tsuda
Journal:  J Chem Inf Model       Date:  2022-09-08       Impact factor: 6.162

5.  Oxidative Cyclization of 5H-Chromeno[2,3-b]pyridines to Benzo[b]chromeno[4,3,2-de][1,6]naphthyridines, Their NMR Study and Computer Evaluation as Material for LED.

Authors:  Yuliya E Ryzhkova; Fedor V Ryzhkov; Artem N Fakhrutdinov; Michail N Elinson
Journal:  Molecules       Date:  2022-06-28       Impact factor: 4.927

Review 6.  Implicit Solvation Methods for Catalysis at Electrified Interfaces.

Authors:  Stefan Ringe; Nicolas G Hörmann; Harald Oberhofer; Karsten Reuter
Journal:  Chem Rev       Date:  2021-12-20       Impact factor: 72.087

7.  Direct observation of coherent femtosecond solvent reorganization coupled to intramolecular electron transfer.

Authors:  Elisa Biasin; Zachary W Fox; Amity Andersen; Kathryn Ledbetter; Kasper S Kjær; Roberto Alonso-Mori; Julia M Carlstad; Matthieu Chollet; James D Gaynor; James M Glownia; Kiryong Hong; Thomas Kroll; Jae Hyuk Lee; Chelsea Liekhus-Schmaltz; Marco Reinhard; Dimosthenis Sokaras; Yu Zhang; Gilles Doumy; Anne Marie March; Stephen H Southworth; Shaul Mukamel; Kelly J Gaffney; Robert W Schoenlein; Niranjan Govind; Amy A Cordones; Munira Khalil
Journal:  Nat Chem       Date:  2021-02-15       Impact factor: 24.427

8.  Coupling of photoactive transition metal complexes to a functional polymer matrix*.

Authors:  Miftahussurur Hamidi Putra; Sebastian Seidenath; Stephan Kupfer; Stefanie Gräfe; Axel Groß
Journal:  Chemistry       Date:  2021-11-24       Impact factor: 5.020

9.  Synthesis and Investigation of Novel CHCA-Derived Matrices for Matrix-Assisted Laser Desorption/Ionization Mass Spectrometric Analysis of Lipids.

Authors:  Antonio Monopoli; Giovanni Ventura; Andrea Aloia; Fulvio Ciriaco; Angelo Nacci; Tommaso R I Cataldi; Cosima D Calvano
Journal:  Molecules       Date:  2022-04-15       Impact factor: 4.927

10.  Inhibition of Amyloid β-Induced Lipid Membrane Permeation and Amyloid β Aggregation by K162.

Authors:  Dusan Mrdenovic; Piotr Zarzycki; Marta Majewska; Izabela S Pieta; Robert Nowakowski; Wlodzimierz Kutner; Jacek Lipkowski; Piotr Pieta
Journal:  ACS Chem Neurosci       Date:  2021-01-22       Impact factor: 4.418

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