Literature DB >> 36071173

RNA m6A regulates transcription via DNA demethylation and chromatin accessibility.

Shuang Deng1, Jialiang Zhang1, Jiachun Su1, Zhixiang Zuo1, Lingxing Zeng1, Kaijing Liu1,2, Yanfen Zheng1, Xudong Huang1, Ruihong Bai1, Lisha Zhuang1, Ying Ye1, Mei Li3, Ling Pan1, Junge Deng1, Guandi Wu1, Rui Li1, Shaoping Zhang1, Chen Wu4, Dongxin Lin5,6,7, Jianjun Chen8, Jian Zheng9,10.   

Abstract

Transcriptional regulation, which integrates chromatin accessibility, transcription factors and epigenetic modifications, is crucial for establishing and maintaining cell identity. The interplay between different epigenetic modifications and its contribution to transcriptional regulation remains elusive. Here, we show that METTL3-mediated RNA N6-methyladenosine (m6A) formation leads to DNA demethylation in nearby genomic loci in normal and cancer cells, which is mediated by the interaction between m6A reader FXR1 and DNA 5-methylcytosine dioxygenase TET1. Upon recognizing RNA m6A, FXR1 recruits TET1 to genomic loci to demethylate DNA, leading to reprogrammed chromatin accessibility and gene transcription. Therefore, we have characterized a regulatory mechanism of chromatin accessibility and gene transcription mediated by RNA m6A formation coupled with DNA demethylation, highlighting the importance of the crosstalk between RNA m6A and DNA modification in physiologic and pathogenic process.
© 2022. The Author(s), under exclusive licence to Springer Nature America, Inc.

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Year:  2022        PMID: 36071173     DOI: 10.1038/s41588-022-01173-1

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   41.307


  69 in total

Review 1.  Histone modifications in transcriptional regulation.

Authors:  Shelley L Berger
Journal:  Curr Opin Genet Dev       Date:  2002-04       Impact factor: 5.578

Review 2.  DNA methylation and chromatin - unraveling the tangled web.

Authors:  Keith D Robertson
Journal:  Oncogene       Date:  2002-08-12       Impact factor: 9.867

Review 3.  Regulation of chromatin by histone modifications.

Authors:  Andrew J Bannister; Tony Kouzarides
Journal:  Cell Res       Date:  2011-02-15       Impact factor: 25.617

4.  Making sense of chromatin states.

Authors:  Monya Baker
Journal:  Nat Methods       Date:  2011-08-30       Impact factor: 28.547

Review 5.  Chromatin accessibility and the regulatory epigenome.

Authors:  Sandy L Klemm; Zohar Shipony; William J Greenleaf
Journal:  Nat Rev Genet       Date:  2019-04       Impact factor: 53.242

Review 6.  Transcriptional regulation by DNA methylation.

Authors:  Anna R Poetsch; Christoph Plass
Journal:  Cancer Treat Rev       Date:  2011-05-20       Impact factor: 12.111

Review 7.  Transcriptional regulation and its misregulation in disease.

Authors:  Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

8.  N 6-methyladenosine of chromosome-associated regulatory RNA regulates chromatin state and transcription.

Authors:  Jun Liu; Xiaoyang Dou; Chuanyuan Chen; Chuan Chen; Chang Liu; Meng Michelle Xu; Siqi Zhao; Bin Shen; Yawei Gao; Dali Han; Chuan He
Journal:  Science       Date:  2020-01-16       Impact factor: 47.728

Review 9.  Epigenetics of Modified DNA Bases: 5-Methylcytosine and Beyond.

Authors:  Suresh Kumar; Viswanathan Chinnusamy; Trilochan Mohapatra
Journal:  Front Genet       Date:  2018-12-18       Impact factor: 4.599

10.  DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis.

Authors:  Zhenhui Zhong; Suhua Feng; Sascha H Duttke; Magdalena E Potok; Yiwei Zhang; Javier Gallego-Bartolomé; Wanlu Liu; Steven E Jacobsen
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-02       Impact factor: 12.779

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  1 in total

1.  When RNA methylation meets DNA methylation.

Authors:  Wenqi Xu; Hongjie Shen
Journal:  Nat Genet       Date:  2022-09       Impact factor: 41.307

  1 in total

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