Literature DB >> 36043868

Draft Genome Sequences of 9 Actinobacteria from the Family Microbacteriaceae Associated with Insect- and Nematode-Damaged Plants.

Sergey V Tarlachkov1, Yury V Ospennikov1, Alexander V Demidov1, Irina P Starodumova1, Lubov V Dorofeeva1, Natalia V Prisyazhnaya1, Vladimir N Chizhov2, Sergei A Subbotin3, Lyudmila I Evtushenko1.   

Abstract

Draft genome sequences of 9 strains of known and putative new species of Microbacteriaceae isolated from insect- and nematode-damaged plants were generated using Illumina technology. The data obtained will contribute to the development of the genome-based prokaryote taxonomy and the knowledge on the biology of the microbial group investigated.

Entities:  

Year:  2022        PMID： 36043868      PMCID： PMC9584284          DOI： 10.1128/mra.00487-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  10 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

Review 2.  Rathayibacter toxicus, Other Rathayibacter Species Inducing Bacterial Head Blight of Grasses, and the Potential for Livestock Poisonings.

Authors:  Timothy D Murray; Brenda K Schroeder; William L Schneider; Douglas G Luster; Aaron Sechler; Elizabeth E Rogers; Sergei A Subbotin
Journal:  Phytopathology       Date:  2017-05-15       Impact factor: 4.025

3.  Rathayibacter oskolensis sp. nov., a novel actinobacterium from Androsace koso-poljanskii Ovcz. (Primulaceae) endemic to the Central Russian Upland.

Authors:  Lubov V Dorofeeva; Irina P Starodumova; Valentina I Krauzova; Natalia V Prisyazhnaya; Natalia G Vinokurova; Valentina Y Lysanskaya; Sergey V Tarlachkov; Lyudmila I Evtushenko
Journal:  Int J Syst Evol Microbiol       Date:  2018-03-08       Impact factor: 2.747

4.  Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes.

Authors:  Jongsik Chun; Aharon Oren; Antonio Ventosa; Henrik Christensen; David Ruiz Arahal; Milton S da Costa; Alejandro P Rooney; Hana Yi; Xue-Wei Xu; Sofie De Meyer; Martha E Trujillo
Journal:  Int J Syst Evol Microbiol       Date:  2018-01       Impact factor: 2.747

5.  Shifting the genomic gold standard for the prokaryotic species definition.

Authors:  Michael Richter; Ramon Rosselló-Móra
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-23       Impact factor: 11.205

6.  Genome sequence-based species delimitation with confidence intervals and improved distance functions.

Authors:  Jan P Meier-Kolthoff; Alexander F Auch; Hans-Peter Klenk; Markus Göker
Journal:  BMC Bioinformatics       Date:  2013-02-21       Impact factor: 3.169

7.  Complete and Draft Genome Sequences of 12 Plant-Associated Rathayibacter Strains of Known and Putative New Species.

Authors:  Sergey V Tarlachkov; Irina P Starodumova; Lubov V Dorofeeva; Natalia V Prisyazhnaya; Semen A Leyn; Jaime E Zlamal; Marinela L Elane; Andrei L Osterman; Steven A Nadler; Sergei A Subbotin; Lyudmila I Evtushenko
Journal:  Microbiol Resour Announc       Date:  2020-05-28

8.  Draft Genome Sequences of 28 Actinobacteria of the Family Microbacteriaceae Associated with Nematode-Infected Plants.

Authors:  Sergey V Tarlachkov; Irina P Starodumova; Lubov V Dorofeeva; Natalia V Prisyazhnaya; Tatiana V Roubtsova; Vladimir N Chizhov; Steven A Nadler; Sergei A Subbotin; Lyudmila I Evtushenko
Journal:  Microbiol Resour Announc       Date:  2021-03-04

9.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

10.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971
  10 in total

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