Literature DB >> 33664138

Draft Genome Sequences of 28 Actinobacteria of the Family Microbacteriaceae Associated with Nematode-Infected Plants.

Sergey V Tarlachkov1, Irina P Starodumova2, Lubov V Dorofeeva2, Natalia V Prisyazhnaya2, Tatiana V Roubtsova3, Vladimir N Chizhov4, Steven A Nadler5, Sergei A Subbotin6,5,7, Lyudmila I Evtushenko2.   

Abstract

Draft genome sequences of 28 strains of Microbacteriaceae from plants infested by plant-parasitic nematodes were obtained using Illumina technology. The sequence data will provide useful baseline information for the development of comparative genomics and systematics of Microbacteriaceae and facilitate understanding of molecular mechanisms involved in interactions between plants and nematode-associated bacterial complexes.
Copyright © 2021 Tarlachkov et al.

Entities:  

Year:  2021        PMID： 33664138      PMCID： PMC7936636          DOI： 10.1128/MRA.01400-20

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  12 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

Review 2.  Rathayibacter toxicus, Other Rathayibacter Species Inducing Bacterial Head Blight of Grasses, and the Potential for Livestock Poisonings.

Authors:  Timothy D Murray; Brenda K Schroeder; William L Schneider; Douglas G Luster; Aaron Sechler; Elizabeth E Rogers; Sergei A Subbotin
Journal:  Phytopathology       Date:  2017-05-15       Impact factor: 4.025

3.  QUAST: quality assessment tool for genome assemblies.

Authors:  Alexey Gurevich; Vladislav Saveliev; Nikolay Vyahhi; Glenn Tesler
Journal:  Bioinformatics       Date:  2013-02-19       Impact factor: 6.937

4.  Rathayibacter oskolensis sp. nov., a novel actinobacterium from Androsace koso-poljanskii Ovcz. (Primulaceae) endemic to the Central Russian Upland.

Authors:  Lubov V Dorofeeva; Irina P Starodumova; Valentina I Krauzova; Natalia V Prisyazhnaya; Natalia G Vinokurova; Valentina Y Lysanskaya; Sergey V Tarlachkov; Lyudmila I Evtushenko
Journal:  Int J Syst Evol Microbiol       Date:  2018-03-08       Impact factor: 2.747

5.  Agromyces albus sp. nov., isolated from a plant (Androsace sp.).

Authors:  Lubov V Dorofeeva; Valentina I Krausova; Lyudmila I Evtushenko; James M Tiedje
Journal:  Int J Syst Evol Microbiol       Date:  2003-09       Impact factor: 2.747

6.  Draft Genome Sequence of "Rathayibacter tanaceti" Strain VKM Ac-2596 Isolated from Tanacetum vulgare Infested by a Foliar Nematode.

Authors:  Oleg V Vasilenko; Irina P Starodumova; Sergey V Tarlachkov; Lubov V Dorofeeva; Alexander N Avtukh; Lyudmila I Evtushenko
Journal:  Genome Announc       Date:  2016-06-16

7.  Draft Genome Sequence of Rathayibacter sp. Strain VKM Ac-2630 Isolated from Leaf Gall Induced by the Knapweed Nematode Mesoanguina picridis on Acroptilon repens.

Authors:  Irina P Starodumova; Sergey V Tarlachkov; Natalia V Prisyazhnaya; Lubov V Dorofeeva; Elena V Ariskina; Vladimir N Chizhov; Sergei A Subbotin; Lyudmila I Evtushenko; Oleg V Vasilenko
Journal:  Genome Announc       Date:  2017-07-27

8.  Complete and Draft Genome Sequences of 12 Plant-Associated Rathayibacter Strains of Known and Putative New Species.

Authors:  Sergey V Tarlachkov; Irina P Starodumova; Lubov V Dorofeeva; Natalia V Prisyazhnaya; Semen A Leyn; Jaime E Zlamal; Marinela L Elane; Andrei L Osterman; Steven A Nadler; Sergei A Subbotin; Lyudmila I Evtushenko
Journal:  Microbiol Resour Announc       Date:  2020-05-28

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

10.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937
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  2 in total

1.  Curtobacterium allii sp. nov., the actinobacterial pathogen causing onion bulb rot.

Authors:  Manzeal Khanal; Bed Prakash Bhatta; Sujan Timilsina; Sudeep Ghimire; Kimberly Cochran; Subas Malla
Journal:  Antonie Van Leeuwenhoek       Date:  2022-09-13       Impact factor: 2.158

2.  Draft Genome Sequences of 9 Actinobacteria from the Family Microbacteriaceae Associated with Insect- and Nematode-Damaged Plants.

Authors:  Sergey V Tarlachkov; Yury V Ospennikov; Alexander V Demidov; Irina P Starodumova; Lubov V Dorofeeva; Natalia V Prisyazhnaya; Vladimir N Chizhov; Sergei A Subbotin; Lyudmila I Evtushenko
Journal:  Microbiol Resour Announc       Date:  2022-08-31
  2 in total

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