Literature DB >> 36018400

Paenibacillus arenilitoris sp. nov., isolated from seashore sand and genome mining revealed the biosynthesis potential as antibiotic producer.

Na Deng1,2, Huiqin Huang3,2,4, Yonghua Hu3,2,5,4, Xu Wang6, Kunlian Mo7,8,9.   

Abstract

Strain IB182493T, a marine, aerobic, Gram-stain-negative and motile bacterium, was isolated from seashore sand of South China Sea. Cells grew optimally at 25-30 °C, pH 7.0-8.0 and with 2-4% NaCl (w/v). Phylogenetic analysis based on 16S rRNA gene sequence comparison revealed that the strain formed a distinct lineage within the genus Paenibacillus, and was most closely related to Paenibacillus harenae DSM 16969 T (similarity 96.6%) and Paenibacillus alkaliterrae DSM 17040 T (similarity 96.1%). The chemotaxonomic characteristics of strain IB182493T included MK-7 as the predominant isoprenoid quinone, anteiso-C15:0 and iso-C16:0 as the major cellular fatty acids and meso-diaminopimelic acid as the diagnostic diaminoacid in cell wall peptidoglycan. The polar lipids consisted of phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and two unidentified phospholipids. The DNA G + C content of strain IB182493T was 56.2 %. The values of whole genome average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) between the isolate and the closely related type strains were less than 84.7% and 23.6%, respectively. On the basis of phenotypic and chemotaxonomic properties, phylogenetic distinctiveness and genomic data, we named the strain as Paenibacillus arenilitoris sp. nov. and proposed that strain IB182493T (= MCCC 1K04626T = JCM 34215 T) in the genus Paenibacillus represents a novel species.
© 2022. The Author(s), under exclusive licence to Springer Nature Switzerland AG.

Entities:  

Keywords:  16S rRNA gene; Paenibacillus arenilitoris sp. nov.; Polyphasic taxonomy

Mesh:

Substances:

Year:  2022        PMID: 36018400     DOI: 10.1007/s10482-022-01773-1

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.158


  37 in total

1.  Paenibacillus koreensis sp. nov., a new species that produces an iturin-like antifungal compound.

Authors:  Y R Chung; C H Kim; I Hwang; J Chun
Journal:  Int J Syst Evol Microbiol       Date:  2000-07       Impact factor: 2.747

2.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

3.  Microbial water stress.

Authors:  A D Brown
Journal:  Bacteriol Rev       Date:  1976-12

4.  Rational improvement of the affinity and selectivity of integrin binding of grafted lasso peptides.

Authors:  Julian D Hegemann; Mariarosaria De Simone; Marcel Zimmermann; Thomas A Knappe; Xiulan Xie; Francesco Saverio Di Leva; Luciana Marinelli; Ettore Novellino; Stefan Zahler; Horst Kessler; Mohamed A Marahiel
Journal:  J Med Chem       Date:  2014-06-27       Impact factor: 7.446

5.  Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes.

Authors:  Jongsik Chun; Aharon Oren; Antonio Ventosa; Henrik Christensen; David Ruiz Arahal; Milton S da Costa; Alejandro P Rooney; Hana Yi; Xue-Wei Xu; Sofie De Meyer; Martha E Trujillo
Journal:  Int J Syst Evol Microbiol       Date:  2018-01       Impact factor: 2.747

6.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

7.  Desertibacillus haloalkaliphilus gen. nov., sp. nov., isolated from a saline desert.

Authors:  Hitarth B Bhatt; M Azmatunnisa Begum; Sasikala Chintalapati; Venkata Ramana Chintalapati; Satya P Singh
Journal:  Int J Syst Evol Microbiol       Date:  2017-09-21       Impact factor: 2.747

8.  RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.

Authors:  Thomas Brettin; James J Davis; Terry Disz; Robert A Edwards; Svetlana Gerdes; Gary J Olsen; Robert Olson; Ross Overbeek; Bruce Parrello; Gordon D Pusch; Maulik Shukla; James A Thomason; Rick Stevens; Veronika Vonstein; Alice R Wattam; Fangfang Xia
Journal:  Sci Rep       Date:  2015-02-10       Impact factor: 4.379

Review 9.  Current knowledge and perspectives of Paenibacillus: a review.

Authors:  Elliot Nicholas Grady; Jacqueline MacDonald; Linda Liu; Alex Richman; Ze-Chun Yuan
Journal:  Microb Cell Fact       Date:  2016-12-01       Impact factor: 5.328

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