| Literature DB >> 36009895 |
Borong Tu1,2, Nana Cao1,2, Bingjie Zhang3, Wende Zheng1,2, Jiahao Li1,2, Xiaowen Tang1,2, Kaize Su1,2, Jinxuan Li1,2, Zhen Zhang1,2, Zhenping Yan1,2, Dongli Li1,2, Xi Zheng1,2, Kun Zhang1,2,3, Weiqian David Hong1,2,4, Panpan Wu1,2,3.
Abstract
Fusidic acid (FA), a narrow-spectrum antibiotics, is highly sensitive to various Gram-positive cocci associated with skin infections. It has outstanding antibacterial effects against certain Gram-positive bacteria whilst no cross-resistance with other antibiotics. Two series of FA derivatives were synthesized and their antibacterial activities were tested. A new aromatic side-chain analog, FA-15 exhibited good antibacterial activity with MIC values in the range of 0.781-1.563 µM against three strains of Staphylococcus spp. Furthermore, through the assessment by the kinetic assay, similar characteristics of bacteriostasis by FA and its aromatic derivatives were observed. In addition, anti-inflammatory activities of FA and its aromatic derivatives were evaluated by using a 12-O-tetradecanoylphorbol-13-acetate (TPA) induced mouse ear edema model. The results also indicated that FA and its aromatic derivatives effectively reduced TPA-induced ear edema in a dose-dependent manner. Following, multiform computerized simulation, including homology modeling, molecular docking, molecular dynamic simulation and QSAR was conducted to clarify the mechanism and regularity of activities. Overall, the present work gave vital clues about structural modifications and has profound significance in deeply scouting for bioactive potentials of FA and its derivatives.Entities:
Keywords: anti-inflammatory; antimicrobial; fusidic acid; molecular docking; molecular dynamic
Year: 2022 PMID: 36009895 PMCID: PMC9405029 DOI: 10.3390/antibiotics11081026
Source DB: PubMed Journal: Antibiotics (Basel) ISSN: 2079-6382
Figure 1Structure of fusidic acid and its derivatives.
Scheme 1The synthesis of fusidic acid ester derivatives 1–7 at the position of C-3.
Scheme 2The synthesis of fusidic acid ester derivatives 8–26 at the position of C-3. Reagents and conditions: DCM, DMAP, pyridine, acid chloride, r.t., and 3 h.
Antibacterial activity of FA and its derivatives expressed in the inhibition.
| Compound | ZOIs (mm) | ||||
|---|---|---|---|---|---|
|
|
|
|
|
| |
| FA | 20.31 ± 0.34 f | 19.43 ± 0.42 f | 19.91 ± 0.20 f | <6 | <6 |
| FA-1 | <6 | <6 | <6 | <6 | <6 |
| FA-2 | <6 | <6 | <6 | <6 | <6 |
| FA-3 | <6 | <6 | <6 | <6 | <6 |
| FA-4 | <6 | <6 | <6 | <6 | <6 |
| FA-5 | <6 | <6 | <6 | <6 | <6 |
| FA-6 | 19.01 ± 0.77 f | 19.39 ± 0.51 f | 16.41 ± 0.81 f | <6 | <6 |
| FA-7 | <6 | <6 | <6 | <6 | <6 |
| FA-8 | 19.57 ± 0.31 f | 19.49 ± 0.44 f | 21.04 ± 0.27 f | <6 | <6 |
| FA-9 | 20.52 ± 0.47 f | 18.79 ± 0.41 f | 18.26 ± 0.23 f | <6 | <6 |
| FA-10 | 20.39 ± 0.35 f | 18.77 ± 0.19 f | 20.67 ± 0.54 f | <6 | <6 |
| FA-11 | 21.15 ± 0.39 f | 19.87 ± 0.40 f | 20.79 ± 0.33 f | <6 | <6 |
| FA-12 | 19.44 ± 0.37 f | 20.88 ± 0.31 f | 17.44 ± 0.41 f | <6 | <6 |
| FA-13 | 13.61 ± 0.30 f | 14.48 ± 0.38 f | 11.69 ± 0.40 f | <6 | <6 |
| FA-14 | 20.88 ± 0.66 f | 19.97 ± 0.49 f | 20.30 ± 0.28 f | <6 | <6 |
| FA-15 | 20.27 ± 0.44 f | 21.73 ± 0.22 f | 20.66 ± 0.52 f | <6 | <6 |
| FA-16 | 20.23 ± 0.37 f | 19.57 ± 0.14 f | 20.69 ± 0.53 f | <6 | <6 |
| FA-17 | 19.01 ± 0.21 f | 19.95 ± 0.42 f | 19.07 ± 0.45 f | <6 | <6 |
| FA-18 | 20.47 ± 0.20 f | 19.85 ± 0.86 f | 21.38 ± 0.63 f | <6 | <6 |
| FA-19 | 17.95 ± 0.31 f | 19.35 ± 0.28 f | 18.68 ± 0.48 f | <6 | <6 |
| FA-20 | 17.71 ± 0.43 f | 18.15 ± 0.24 f | 18.67 ± 0.56 f | <6 | <6 |
| FA-21 | 19.53 ± 0.27 f | 20.33 ± 0.42 f | 20.79 ± 0.33 f | <6 | <6 |
| FA-22 | 20.65 ± 0.44 f | 20.81 ± 0.35 f | 20.27 ± 0.36 f | <6 | <6 |
| FA-23 | 20.05 ± 0.24 f | 19.42 ± 0.59 f | 19.47 ± 0.22 f | <6 | <6 |
| FA-24 | 20.89 ± 0.41 f | 19.91 ± 0.18 f | 21.34 ± 0.39 f | <6 | <6 |
| FA-25 | 20.12 ± 0.10 f | 20.52 ± 0.81 f | 18.26 ± 0.02 f | <6 | <6 |
| FA-26 | 18.33 ± 0.43 f | 20.37 ± 0.24 f | 18.79 ± 0.69 f | <6 | <6 |
The reported data representing the mean (n = 3) ± SD: , ATCC 6538; , ATCC 29213; , ATCC 12228; , CMCC 44102; and , CMCC 50115. f p < 0.001; compared with blank inhibition zone diameter; 6 mm.
Antibacterial activity of FA and its derivatives expressed in MIC (µM).
| Compound | MIC (µM) | ||
|---|---|---|---|
|
|
|
| |
| FA | 0.194 | 0.391 | 0.625 |
| FA-1 | ≥200 | ≥200 | ≥200 |
| FA-2 | ≥200 | ≥200 | ≥200 |
| FA-3 | ≥200 | ≥200 | ≥200 |
| FA-4 | ≥200 | ≥200 | ≥200 |
| FA-5 | ≥200 | ≥200 | ≥200 |
| FA-6 | 1.563 | 3.125 | 3.125 |
| FA-7 | ≥200 | ≥200 | ≥200 |
| FA-8 | 1.563 | 1.563 | 3.125 |
| FA-9 | 1.563 | 1.563 | 3.125 |
| FA-10 | 1.563 | 3.125 | 1.563 |
| FA-11 | 0.781 | 1.563 | 3.125 |
| FA-12 | 0.781 | 1.563 | 3.125 |
| FA-13 | 6.250 | 6.250 | 6.250 |
| FA-14 | 1.563 | 1.563 | 1.563 |
| FA-15 | 0.781 | 1.563 | 1.563 |
| FA-16 | 0.781 | 1.563 | 1.563 |
| FA-17 | 0.781 | 1.563 | 1.563 |
| FA-18 | 1.563 | 3.125 | 3.125 |
| FA-19 | 1.563 | 1.563 | 1.563 |
| FA-20 | 1.563 | 3.125 | 1.563 |
| FA-21 | 0.781 | 1.563 | 1.563 |
| FA-22 | 1.563 | 1.563 | 1.563 |
| FA-23 | 1.563 | 1.563 | 1.563 |
| FA-24 | 0.781 | 1.563 | 1.563 |
| FA-25 | 1.563 | 3.125 | 3.125 |
| FA-26 | 1.563 | 1.563 | 1.563 |
The minimum inhibitory concentration (MIC) is the lowest concentration of the compound that completely inhibits the growth of bacteria: , ATCC6538; , ATCC29213; , ATCC12228.
Figure 2Tests of bacterial kinetic growth curves of FA and FA-15 for the three Gram-positive strains: Staphylococcus aureus (ATCC 6538; A,D), Staphylococcus albu (ATCC 29213; B,E), and Staphylococcus epidermidis (ATCC 12228; C,F) exposed to three different compound concentrations of FA (A–C) and FA-15 (D–F); n = 4.
Figure 3(A) 3D homology model of EF-G structure for docking; key residues related to the FA binding in the homology model are shown in the expended figure (cyan sticks) in comparison to the same residues in the reported apo structure (gray sticks). (B) Ramachandran plot of the 3D model. (C) Profile-3D analysis of the 3D model.
Figure 4Docking models of FA and FA derivatives into EF-G: (A) binding mode of EF-G and FA, (B) mode compound FA-3 docked in the cleavage site of EF-G, and (C) mode compound FA-15 docked in the cleavage site of EF-G. The ligands FA, FA-3, and FA-15 are shown as green, blue, and magenta sticks, respectively; the vital amino acid residues are shown as cyan sticks; and the H-bond and π-cation interaction are shown as yellow and green dotted lines, respectively.
Figure 5Molecular dynamic simulations of FA-15–EF-G complex: (A) root mean square deviation (RMSD) plot, (B) root mean square fluctuation (RMSF) plot, and (C) protein–ligand contacts.
Figure 6(A) Correlation between the experimental bacterial inhibitory activity and predicted activity of the phase QSAR model (pMIC = −lg MIC), showing that R2 = 0.963: (B) steric fields with green favorable, and yellow unfavorable; (C) phase electrostatic fields with blue favorable, and red unfavorable; (D) hydrophobic fields with yellow favorable and white unfavorable; and (E) H-bond acceptor fields with magenta favorable and red unfavorable.
Inhibition effects of FA and FA-15 in TPA-induced mouse-ear swelling experiment.
| Compound | 9 mm Diameter Right Mouse Ear | |||
|---|---|---|---|---|
| Net Weight (mg) | Swelling Degree (mg) | Swelling Rate (%) | IR (%) | |
| Blank | 8.85 ± 0.35 a | 1.15 ± 0.35 a | NT | NT |
| TPA | 23.0 ± 0.99 | 13.5 ± 1.27 | 260.32% ± 21.59% | NT |
| FA (2 μg/μL) | 17.2 ± 0.42 a | 8.55 ± 0.21 b | 194.60% ± 12.57% | 36.46% ± 4.42% |
| FA (4 μg/μL) | 16.15 ± 0.78 a | 7.55 ± 0.92 b | 182.81% ± 16.09% | 44.15% ± 1.54% |
| FA (8 μg/μL) | 15.35 ± 0.35 a | 6.75 ± 0.35 a | 173.66% ± 10.93% | 49.90% ± 2.10% |
| FA-15 (2 μg/μL) | 19.3 ± 1.13 c | 10.3 ± 0.85 c | 218.00% ± 4.07% | 23.07% ± 13.54% |
| FA-15 (4 μg/μL) | 17.0 ± 0.85 a | 8.0 ± 1.13 b | 192.05% ± 1.92% | 40.08% ± 14.03% |
| FA-15 (8 μg/μL) | 14.3 ± 0.42 a | 5.3 ± 0.00 a | 161.81% ± 11.26% | 60.57% ± 3.72% |
| Dexamethasone (2.5 μg/μL) | 10.65 ± 0.07 a | 1.95 ± 0.35 a | 120.42% ± 4.01% | 85.37% ± 4.00% |
Net weight, net weight of 9 mm diameter sliced right mouse ear; swelling degree, the right ear of the mouse minus the net weight of the mouse’s left ear; swelling rate, net weight ratio of right ear to blank group in test group; IR, inhibition of swelling rate; NT, not test. Dexamethasone was used as a positive control in this assay. a p < 0.001, compared with only the TPA-treated group; b p < 0.01, compared with only the TPA-treated group; and c p < 0.05, compared with only the TPA-treated group.