PURPOSE OF REVIEW: Risk stratification for chronic kidney is becoming increasingly important as a clinical tool for both treatment and prevention measures. The goal of this review is to identify how machine learning tools contribute and facilitate risk stratification in the clinical setting. RECENT FINDINGS: The two key machine learning paradigms to predictively stratify kidney disease risk are genomics-based and electronic health record based approaches. These methods can provide both quantitative information such as relative risk and qualitative information such as characterizing risk by subphenotype. SUMMARY: The four key methods to stratify chronic kidney disease risk are genomics, multiomics, supervised and unsupervised machine learning methods. Polygenic risk scores utilize whole genome sequencing data to generate an individual's relative risk compared with the population. Multiomic methods integrate information from multiple biomarkers to generate trajectories and prognostic different outcomes. Supervised machine learning methods can directly utilize the growing compendia of electronic health records such as laboratory results and notes to generate direct risk predictions, while unsupervised machine learning methods can cluster individuals with chronic kidney disease into subphenotypes with differing approaches to care.
PURPOSE OF REVIEW: Risk stratification for chronic kidney is becoming increasingly important as a clinical tool for both treatment and prevention measures. The goal of this review is to identify how machine learning tools contribute and facilitate risk stratification in the clinical setting. RECENT FINDINGS: The two key machine learning paradigms to predictively stratify kidney disease risk are genomics-based and electronic health record based approaches. These methods can provide both quantitative information such as relative risk and qualitative information such as characterizing risk by subphenotype. SUMMARY: The four key methods to stratify chronic kidney disease risk are genomics, multiomics, supervised and unsupervised machine learning methods. Polygenic risk scores utilize whole genome sequencing data to generate an individual's relative risk compared with the population. Multiomic methods integrate information from multiple biomarkers to generate trajectories and prognostic different outcomes. Supervised machine learning methods can directly utilize the growing compendia of electronic health records such as laboratory results and notes to generate direct risk predictions, while unsupervised machine learning methods can cluster individuals with chronic kidney disease into subphenotypes with differing approaches to care.
Authors: Bridget M Lin; Girish N Nadkarni; Ran Tao; Mariaelisa Graff; Myriam Fornage; Steven Buyske; Tara C Matise; Heather M Highland; Lynne R Wilkens; Christopher S Carlson; S Lani Park; V Wendy Setiawan; Jose Luis Ambite; Gerardo Heiss; Eric Boerwinkle; Dan-Yu Lin; Andrew P Morris; Ruth J F Loos; Charles Kooperberg; Kari E North; Christina L Wassel; Nora Franceschini Journal: Front Genet Date: 2019-05-24 Impact factor: 4.599
Authors: Michael Kammer; Andreas Heinzel; Jill A Willency; Kevin L Duffin; Gert Mayer; Kai Simons; Mathias J Gerl; Christian Klose; Georg Heinze; Roman Reindl-Schwaighofer; Karin Hu; Paul Perco; Susanne Eder; Laszlo Rosivall; Patrick B Mark; Wenjun Ju; Matthias Kretzler; Mark I McCarthy; Hiddo L Heerspink; Andrzej Wiecek; Maria F Gomez; Rainer Oberbauer Journal: Kidney Int Date: 2019-08-30 Impact factor: 10.612
Authors: Matthias Wuttke; Yong Li; Man Li; Karsten B Sieber; Mary F Feitosa; Mathias Gorski; Adrienne Tin; Lihua Wang; Audrey Y Chu; Anselm Hoppmann; Holger Kirsten; Ayush Giri; Jin-Fang Chai; Gardar Sveinbjornsson; Bamidele O Tayo; Teresa Nutile; Christian Fuchsberger; Jonathan Marten; Massimiliano Cocca; Sahar Ghasemi; Yizhe Xu; Katrin Horn; Damia Noce; Peter J van der Most; Sanaz Sedaghat; Zhi Yu; Masato Akiyama; Saima Afaq; Tarunveer S Ahluwalia; Peter Almgren; Najaf Amin; Johan Ärnlöv; Stephan J L Bakker; Nisha Bansal; Daniela Baptista; Sven Bergmann; Mary L Biggs; Ginevra Biino; Michael Boehnke; Eric Boerwinkle; Mathilde Boissel; Erwin P Bottinger; Thibaud S Boutin; Hermann Brenner; Marco Brumat; Ralph Burkhardt; Adam S Butterworth; Eric Campana; Archie Campbell; Harry Campbell; Mickaël Canouil; Robert J Carroll; Eulalia Catamo; John C Chambers; Miao-Ling Chee; Miao-Li Chee; Xu Chen; Ching-Yu Cheng; Yurong Cheng; Kaare Christensen; Renata Cifkova; Marina Ciullo; Maria Pina Concas; 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Authors: Victor J Lei; ThaiBinh Luong; Eric Shan; Xinwei Chen; Mark D Neuman; Nwamaka D Eneanya; Daniel E Polsky; Kevin G Volpp; Lee A Fleisher; John H Holmes; Amol S Navathe Journal: JAMA Netw Open Date: 2019-12-02
Authors: Xing Song; Alan S L Yu; John A Kellum; Lemuel R Waitman; Michael E Matheny; Steven Q Simpson; Yong Hu; Mei Liu Journal: Nat Commun Date: 2020-11-09 Impact factor: 14.919