Literature DB >> 36004937

Machine learning for risk stratification in kidney disease.

Faris F Gulamali1, Ashwin S Sawant, Girish N Nadkarni.   

Abstract

PURPOSE OF REVIEW: Risk stratification for chronic kidney is becoming increasingly important as a clinical tool for both treatment and prevention measures. The goal of this review is to identify how machine learning tools contribute and facilitate risk stratification in the clinical setting. RECENT
FINDINGS: The two key machine learning paradigms to predictively stratify kidney disease risk are genomics-based and electronic health record based approaches. These methods can provide both quantitative information such as relative risk and qualitative information such as characterizing risk by subphenotype.
SUMMARY: The four key methods to stratify chronic kidney disease risk are genomics, multiomics, supervised and unsupervised machine learning methods. Polygenic risk scores utilize whole genome sequencing data to generate an individual's relative risk compared with the population. Multiomic methods integrate information from multiple biomarkers to generate trajectories and prognostic different outcomes. Supervised machine learning methods can directly utilize the growing compendia of electronic health records such as laboratory results and notes to generate direct risk predictions, while unsupervised machine learning methods can cluster individuals with chronic kidney disease into subphenotypes with differing approaches to care.
Copyright © 2022 Wolters Kluwer Health, Inc. All rights reserved.

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Year:  2022        PMID: 36004937      PMCID: PMC9529795          DOI: 10.1097/MNH.0000000000000832

Source DB:  PubMed          Journal:  Curr Opin Nephrol Hypertens        ISSN: 1062-4821            Impact factor:   3.416


  29 in total

Review 1.  The tissue proteome in the multi-omic landscape of kidney disease.

Authors:  Markus M Rinschen; Julio Saez-Rodriguez
Journal:  Nat Rev Nephrol       Date:  2020-10-07       Impact factor: 28.314

2.  Utilization of Deep Learning for Subphenotype Identification in Sepsis-Associated Acute Kidney Injury.

Authors:  Kumardeep Chaudhary; Akhil Vaid; Áine Duffy; Ishan Paranjpe; Suraj Jaladanki; Manish Paranjpe; Kipp Johnson; Avantee Gokhale; Pattharawin Pattharanitima; Kinsuk Chauhan; Ross O'Hagan; Tielman Van Vleck; Steven G Coca; Richard Cooper; Benjamin Glicksberg; Erwin P Bottinger; Lili Chan; Girish N Nadkarni
Journal:  Clin J Am Soc Nephrol       Date:  2020-10-08       Impact factor: 8.237

Review 3.  The Genetic Architecture of Kidney Disease.

Authors:  Martin R Pollak; David J Friedman
Journal:  Clin J Am Soc Nephrol       Date:  2020-01-28       Impact factor: 8.237

4.  Genetics of Chronic Kidney Disease Stages Across Ancestries: The PAGE Study.

Authors:  Bridget M Lin; Girish N Nadkarni; Ran Tao; Mariaelisa Graff; Myriam Fornage; Steven Buyske; Tara C Matise; Heather M Highland; Lynne R Wilkens; Christopher S Carlson; S Lani Park; V Wendy Setiawan; Jose Luis Ambite; Gerardo Heiss; Eric Boerwinkle; Dan-Yu Lin; Andrew P Morris; Ruth J F Loos; Charles Kooperberg; Kari E North; Christina L Wassel; Nora Franceschini
Journal:  Front Genet       Date:  2019-05-24       Impact factor: 4.599

5.  Integrative analysis of prognostic biomarkers derived from multiomics panels helps discrimination of chronic kidney disease trajectories in people with type 2 diabetes.

Authors:  Michael Kammer; Andreas Heinzel; Jill A Willency; Kevin L Duffin; Gert Mayer; Kai Simons; Mathias J Gerl; Christian Klose; Georg Heinze; Roman Reindl-Schwaighofer; Karin Hu; Paul Perco; Susanne Eder; Laszlo Rosivall; Patrick B Mark; Wenjun Ju; Matthias Kretzler; Mark I McCarthy; Hiddo L Heerspink; Andrzej Wiecek; Maria F Gomez; Rainer Oberbauer
Journal:  Kidney Int       Date:  2019-08-30       Impact factor: 10.612

6.  A catalog of genetic loci associated with kidney function from analyses of a million individuals.

Authors:  Matthias Wuttke; Yong Li; Man Li; Karsten B Sieber; Mary F Feitosa; Mathias Gorski; Adrienne Tin; Lihua Wang; Audrey Y Chu; Anselm Hoppmann; Holger Kirsten; Ayush Giri; Jin-Fang Chai; Gardar Sveinbjornsson; Bamidele O Tayo; Teresa Nutile; Christian Fuchsberger; Jonathan Marten; Massimiliano Cocca; Sahar Ghasemi; Yizhe Xu; Katrin Horn; Damia Noce; Peter J van der Most; Sanaz Sedaghat; Zhi Yu; Masato Akiyama; Saima Afaq; Tarunveer S Ahluwalia; Peter Almgren; Najaf Amin; Johan Ärnlöv; Stephan J L Bakker; Nisha Bansal; Daniela Baptista; Sven Bergmann; Mary L Biggs; Ginevra Biino; Michael Boehnke; Eric Boerwinkle; Mathilde Boissel; Erwin P Bottinger; Thibaud S Boutin; Hermann Brenner; Marco Brumat; Ralph Burkhardt; Adam S Butterworth; Eric Campana; Archie Campbell; Harry Campbell; Mickaël Canouil; Robert J Carroll; Eulalia Catamo; John C Chambers; Miao-Ling Chee; Miao-Li Chee; Xu Chen; Ching-Yu Cheng; Yurong Cheng; Kaare Christensen; Renata Cifkova; Marina Ciullo; Maria Pina Concas; James P Cook; Josef Coresh; Tanguy Corre; Cinzia Felicita Sala; Daniele Cusi; John Danesh; E Warwick Daw; Martin H de Borst; Alessandro De Grandi; Renée de Mutsert; Aiko P J de Vries; Frauke Degenhardt; Graciela Delgado; Ayse Demirkan; Emanuele Di Angelantonio; Katalin Dittrich; Jasmin Divers; Rajkumar Dorajoo; Kai-Uwe Eckardt; Georg Ehret; Paul Elliott; Karlhans Endlich; Michele K Evans; Janine F Felix; Valencia Hui Xian Foo; Oscar H Franco; Andre Franke; Barry I Freedman; Sandra Freitag-Wolf; Yechiel Friedlander; Philippe Froguel; Ron T Gansevoort; He Gao; Paolo Gasparini; J Michael Gaziano; Vilmantas Giedraitis; Christian Gieger; Giorgia Girotto; Franco Giulianini; Martin Gögele; Scott D Gordon; Daniel F Gudbjartsson; Vilmundur Gudnason; Toomas Haller; Pavel Hamet; Tamara B Harris; Catharina A Hartman; Caroline Hayward; Jacklyn N Hellwege; Chew-Kiat Heng; Andrew A Hicks; Edith Hofer; Wei Huang; Nina Hutri-Kähönen; Shih-Jen Hwang; M Arfan Ikram; Olafur S Indridason; Erik Ingelsson; Marcus Ising; Vincent W V Jaddoe; Johanna Jakobsdottir; Jost B Jonas; Peter K Joshi; Navya Shilpa Josyula; Bettina Jung; Mika Kähönen; Yoichiro Kamatani; Candace M Kammerer; Masahiro Kanai; Mika Kastarinen; Shona M Kerr; Chiea-Chuen Khor; Wieland Kiess; Marcus E Kleber; Wolfgang Koenig; Jaspal S Kooner; Antje Körner; Peter Kovacs; Aldi T Kraja; Alena Krajcoviechova; Holly Kramer; Bernhard K Krämer; Florian Kronenberg; Michiaki Kubo; Brigitte Kühnel; Mikko Kuokkanen; Johanna Kuusisto; Martina La Bianca; Markku Laakso; Leslie A Lange; Carl D Langefeld; Jeannette Jen-Mai Lee; Benjamin Lehne; Terho Lehtimäki; Wolfgang Lieb; Su-Chi Lim; Lars Lind; Cecilia M Lindgren; Jun Liu; Jianjun Liu; Markus Loeffler; Ruth J F Loos; Susanne Lucae; Mary Ann Lukas; Leo-Pekka Lyytikäinen; Reedik Mägi; Patrik K E Magnusson; Anubha Mahajan; Nicholas G Martin; Jade Martins; Winfried März; Deborah Mascalzoni; Koichi Matsuda; Christa Meisinger; Thomas Meitinger; Olle Melander; Andres Metspalu; Evgenia K Mikaelsdottir; Yuri Milaneschi; Kozeta Miliku; Pashupati P Mishra; Karen L Mohlke; Nina Mononen; Grant W Montgomery; Dennis O Mook-Kanamori; Josyf C Mychaleckyj; Girish N Nadkarni; Mike A Nalls; Matthias Nauck; Kjell Nikus; Boting Ning; Ilja M Nolte; Raymond Noordam; Jeffrey O'Connell; Michelle L O'Donoghue; Isleifur Olafsson; Albertine J Oldehinkel; Marju Orho-Melander; Willem H Ouwehand; Sandosh Padmanabhan; Nicholette D Palmer; Runolfur Palsson; Brenda W J H Penninx; Thomas Perls; Markus Perola; Mario Pirastu; Nicola Pirastu; Giorgio Pistis; Anna I Podgornaia; Ozren Polasek; Belen Ponte; David J Porteous; Tanja Poulain; Peter P Pramstaller; Michael H Preuss; Bram P Prins; Michael A Province; Ton J Rabelink; Laura M Raffield; Olli T Raitakari; Dermot F Reilly; Rainer Rettig; Myriam Rheinberger; Kenneth M Rice; Paul M Ridker; Fernando Rivadeneira; Federica Rizzi; David J Roberts; Antonietta Robino; Peter Rossing; Igor Rudan; Rico Rueedi; Daniela Ruggiero; Kathleen A Ryan; Yasaman Saba; Charumathi Sabanayagam; Veikko Salomaa; Erika Salvi; Kai-Uwe Saum; Helena Schmidt; Reinhold Schmidt; Ben Schöttker; Christina-Alexandra Schulz; Nicole Schupf; Christian M Shaffer; Yuan Shi; Albert V Smith; Blair H Smith; Nicole Soranzo; Cassandra N Spracklen; Konstantin Strauch; Heather M Stringham; Michael Stumvoll; Per O Svensson; Silke Szymczak; E-Shyong Tai; Salman M Tajuddin; Nicholas Y Q Tan; Kent D Taylor; Andrej Teren; Yih-Chung Tham; Joachim Thiery; Chris H L Thio; Hauke Thomsen; Gudmar Thorleifsson; Daniela Toniolo; Anke Tönjes; Johanne Tremblay; Ioanna Tzoulaki; André G Uitterlinden; Simona Vaccargiu; Rob M van Dam; Pim van der Harst; Cornelia M van Duijn; Digna R Velez Edward; Niek Verweij; Suzanne Vogelezang; Uwe Völker; Peter Vollenweider; Gerard Waeber; Melanie Waldenberger; Lars Wallentin; Ya Xing Wang; Chaolong Wang; Dawn M Waterworth; Wen Bin Wei; Harvey White; John B Whitfield; Sarah H Wild; James F Wilson; Mary K Wojczynski; Charlene Wong; Tien-Yin Wong; Liang Xu; Qiong Yang; Masayuki Yasuda; Laura M Yerges-Armstrong; Weihua Zhang; Alan B Zonderman; Jerome I Rotter; Murielle Bochud; Bruce M Psaty; Veronique Vitart; James G Wilson; Abbas Dehghan; Afshin Parsa; Daniel I Chasman; Kevin Ho; Andrew P Morris; Olivier Devuyst; Shreeram Akilesh; Sarah A Pendergrass; Xueling Sim; Carsten A Böger; Yukinori Okada; Todd L Edwards; Harold Snieder; Kari Stefansson; Adriana M Hung; Iris M Heid; Markus Scholz; Alexander Teumer; Anna Köttgen; Cristian Pattaro
Journal:  Nat Genet       Date:  2019-05-31       Impact factor: 38.330

7.  Risk Stratification for Postoperative Acute Kidney Injury in Major Noncardiac Surgery Using Preoperative and Intraoperative Data.

Authors:  Victor J Lei; ThaiBinh Luong; Eric Shan; Xinwei Chen; Mark D Neuman; Nwamaka D Eneanya; Daniel E Polsky; Kevin G Volpp; Lee A Fleisher; John H Holmes; Amol S Navathe
Journal:  JAMA Netw Open       Date:  2019-12-02

8.  Cross-site transportability of an explainable artificial intelligence model for acute kidney injury prediction.

Authors:  Xing Song; Alan S L Yu; John A Kellum; Lemuel R Waitman; Michael E Matheny; Steven Q Simpson; Yong Hu; Mei Liu
Journal:  Nat Commun       Date:  2020-11-09       Impact factor: 14.919

Review 9.  Integrating CKD Into US Primary Care: Bridging the Knowledge and Implementation Gaps.

Authors:  Joseph A Vassalotti; Suelyn C Boucree
Journal:  Kidney Int Rep       Date:  2022-02-04

10.  Machine Learning Prediction Models for Chronic Kidney Disease Using National Health Insurance Claim Data in Taiwan.

Authors:  Surya Krishnamurthy; Kapeleshh Ks; Erik Dovgan; Mitja Luštrek; Barbara Gradišek Piletič; Kathiravan Srinivasan; Yu-Chuan Jack Li; Anton Gradišek; Shabbir Syed-Abdul
Journal:  Healthcare (Basel)       Date:  2021-05-07
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