Literature DB >> 31152163

A catalog of genetic loci associated with kidney function from analyses of a million individuals.

Matthias Wuttke1,2, Yong Li1, Man Li3, Karsten B Sieber4, Mary F Feitosa5, Mathias Gorski6,7, Adrienne Tin8,9, Lihua Wang5, Audrey Y Chu10, Anselm Hoppmann1, Holger Kirsten11,12, Ayush Giri13,14, Jin-Fang Chai15, Gardar Sveinbjornsson16, Bamidele O Tayo17, Teresa Nutile18, Christian Fuchsberger19, Jonathan Marten20, Massimiliano Cocca21, Sahar Ghasemi22,23, Yizhe Xu3, Katrin Horn11,12, Damia Noce19, Peter J van der Most24, Sanaz Sedaghat25, Zhi Yu8,26, Masato Akiyama27,28, Saima Afaq29,30, Tarunveer S Ahluwalia31, Peter Almgren32, Najaf Amin25, Johan Ärnlöv33,34, Stephan J L Bakker35, Nisha Bansal36,37, Daniela Baptista38, Sven Bergmann39,40,41, Mary L Biggs42,43, Ginevra Biino44, Michael Boehnke45, Eric Boerwinkle46, Mathilde Boissel47, Erwin P Bottinger48,49, Thibaud S Boutin20, Hermann Brenner50,51, Marco Brumat52, Ralph Burkhardt12,53,54, Adam S Butterworth55,56, Eric Campana52, Archie Campbell57, Harry Campbell58, Mickaël Canouil47, Robert J Carroll59, Eulalia Catamo21, John C Chambers29,60,61,62,63, Miao-Ling Chee64, Miao-Li Chee64, Xu Chen65, Ching-Yu Cheng64,66,67, Yurong Cheng1, Kaare Christensen68, Renata Cifkova69,70, Marina Ciullo18,71, Maria Pina Concas21, James P Cook72, Josef Coresh8, Tanguy Corre39,40,73, Cinzia Felicita Sala74, Daniele Cusi75,76, John Danesh77, E Warwick Daw5, Martin H de Borst35, Alessandro De Grandi19, Renée de Mutsert78, Aiko P J de Vries79, Frauke Degenhardt80, Graciela Delgado81, Ayse Demirkan25, Emanuele Di Angelantonio82,83, Katalin Dittrich84,85, Jasmin Divers86, Rajkumar Dorajoo87, Kai-Uwe Eckardt88,89, Georg Ehret38, Paul Elliott90,91,92,93, Karlhans Endlich23,94, Michele K Evans95, Janine F Felix25,96,97, Valencia Hui Xian Foo64, Oscar H Franco25,98, Andre Franke80, Barry I Freedman99, Sandra Freitag-Wolf100, Yechiel Friedlander101, Philippe Froguel47,102, Ron T Gansevoort35, He Gao90, Paolo Gasparini21,52, J Michael Gaziano103, Vilmantas Giedraitis104, Christian Gieger105,106,107, Giorgia Girotto21,52, Franco Giulianini108, Martin Gögele19, Scott D Gordon109, Daniel F Gudbjartsson16, Vilmundur Gudnason110,111, Toomas Haller112, Pavel Hamet113,114, Tamara B Harris115, Catharina A Hartman116, Caroline Hayward20, Jacklyn N Hellwege117,118,119, Chew-Kiat Heng120,121, Andrew A Hicks19, Edith Hofer122,123, Wei Huang124,125, Nina Hutri-Kähönen126,127, Shih-Jen Hwang128,129, M Arfan Ikram25, Olafur S Indridason130, Erik Ingelsson131,132,133,134, Marcus Ising135, Vincent W V Jaddoe25,96,97, Johanna Jakobsdottir136, Jost B Jonas137,138, Peter K Joshi58, Navya Shilpa Josyula139, Bettina Jung6, Mika Kähönen140,141, Yoichiro Kamatani27,142, Candace M Kammerer143, Masahiro Kanai27,144, Mika Kastarinen145, Shona M Kerr20, Chiea-Chuen Khor64,87, Wieland Kiess12,84,85, Marcus E Kleber81, Wolfgang Koenig146,147,148, Jaspal S Kooner61,62,63,149, Antje Körner12,84,85, Peter Kovacs150, Aldi T Kraja5, Alena Krajcoviechova69,70, Holly Kramer17,151, Bernhard K Krämer81, Florian Kronenberg152, Michiaki Kubo153, Brigitte Kühnel105, Mikko Kuokkanen154,155, Johanna Kuusisto145,156, Martina La Bianca21, Markku Laakso145,156, Leslie A Lange157, Carl D Langefeld86, Jeannette Jen-Mai Lee15, Benjamin Lehne29, Terho Lehtimäki158,159, Wolfgang Lieb160, Su-Chi Lim15,161, Lars Lind162, Cecilia M Lindgren163,164, Jun Liu25, Jianjun Liu87,165, Markus Loeffler11,12, Ruth J F Loos48,166, Susanne Lucae135, Mary Ann Lukas167, Leo-Pekka Lyytikäinen158,159, Reedik Mägi112, Patrik K E Magnusson65, Anubha Mahajan168,169, Nicholas G Martin109, Jade Martins170, Winfried März171,172,173, Deborah Mascalzoni19, Koichi Matsuda174, Christa Meisinger175,176, Thomas Meitinger147,177,178, Olle Melander179, Andres Metspalu112, Evgenia K Mikaelsdottir16, Yuri Milaneschi180, Kozeta Miliku25,96,97, Pashupati P Mishra158,159, Karen L Mohlke181, Nina Mononen158,159, Grant W Montgomery182, Dennis O Mook-Kanamori78,183, Josyf C Mychaleckyj184, Girish N Nadkarni48,185, Mike A Nalls186,187, Matthias Nauck23,188, Kjell Nikus189,190, Boting Ning191, Ilja M Nolte24, Raymond Noordam192, Jeffrey O'Connell193, Michelle L O'Donoghue194,195, Isleifur Olafsson196, Albertine J Oldehinkel116, Marju Orho-Melander32, Willem H Ouwehand77, Sandosh Padmanabhan197, Nicholette D Palmer198, Runolfur Palsson111,130, Brenda W J H Penninx180, Thomas Perls199, Markus Perola200, Mario Pirastu201, Nicola Pirastu58, Giorgio Pistis202, Anna I Podgornaia10, Ozren Polasek203,204, Belen Ponte205, David J Porteous57,206, Tanja Poulain12, Peter P Pramstaller19, Michael H Preuss48, Bram P Prins55, Michael A Province5, Ton J Rabelink79,207, Laura M Raffield181, Olli T Raitakari208,209, Dermot F Reilly10, Rainer Rettig210, Myriam Rheinberger6, Kenneth M Rice43, Paul M Ridker108,211, Fernando Rivadeneira25,212, Federica Rizzi213,214, David J Roberts215, Antonietta Robino21, Peter Rossing31, Igor Rudan58, Rico Rueedi39,40, Daniela Ruggiero18,71, Kathleen A Ryan216, Yasaman Saba217, Charumathi Sabanayagam64, Veikko Salomaa200, Erika Salvi213,218, Kai-Uwe Saum50, Helena Schmidt219, Reinhold Schmidt122, Ben Schöttker50,51, Christina-Alexandra Schulz32, Nicole Schupf220,221,222, Christian M Shaffer59, Yuan Shi64, Albert V Smith111, Blair H Smith223, Nicole Soranzo224, Cassandra N Spracklen181, Konstantin Strauch225,226, Heather M Stringham45, Michael Stumvoll227, Per O Svensson228,229, Silke Szymczak100, E-Shyong Tai15,165,230, Salman M Tajuddin95, Nicholas Y Q Tan64, Kent D Taylor231, Andrej Teren12,232, Yih-Chung Tham64, Joachim Thiery12,53, Chris H L Thio24, Hauke Thomsen233, Gudmar Thorleifsson16, Daniela Toniolo74, Anke Tönjes227, Johanne Tremblay113,234, Ioanna Tzoulaki90,235, André G Uitterlinden212, Simona Vaccargiu201, Rob M van Dam15,165, Pim van der Harst236,237,238, Cornelia M van Duijn25, Digna R Velez Edward119,239, Niek Verweij236, Suzanne Vogelezang25,96,97, Uwe Völker23,240, Peter Vollenweider241, Gerard Waeber241, Melanie Waldenberger105,106,147, Lars Wallentin242,243, Ya Xing Wang138, Chaolong Wang87,244, Dawn M Waterworth4, Wen Bin Wei245, Harvey White246, John B Whitfield109, Sarah H Wild247, James F Wilson20,58, Mary K Wojczynski5, Charlene Wong67, Tien-Yin Wong64,67, Liang Xu138, Qiong Yang191, Masayuki Yasuda64,248, Laura M Yerges-Armstrong4, Weihua Zhang61,90, Alan B Zonderman95, Jerome I Rotter231,249,250, Murielle Bochud73, Bruce M Psaty251,252, Veronique Vitart20, James G Wilson253, Abbas Dehghan29,90, Afshin Parsa254,255, Daniel I Chasman108,211, Kevin Ho256,257, Andrew P Morris72,168, Olivier Devuyst258, Shreeram Akilesh37,259, Sarah A Pendergrass260, Xueling Sim15, Carsten A Böger6,261, Yukinori Okada262,263, Todd L Edwards119,118, Harold Snieder24, Kari Stefansson16, Adriana M Hung119,264, Iris M Heid7, Markus Scholz11,12, Alexander Teumer22,23, Anna Köttgen265,266, Cristian Pattaro267.   

Abstract

Chronic kidney disease (CKD) is responsible for a public health burden with multi-systemic complications. Through trans-ancestry meta-analysis of genome-wide association studies of estimated glomerular filtration rate (eGFR) and independent replication (n = 1,046,070), we identified 264 associated loci (166 new). Of these, 147 were likely to be relevant for kidney function on the basis of associations with the alternative kidney function marker blood urea nitrogen (n = 416,178). Pathway and enrichment analyses, including mouse models with renal phenotypes, support the kidney as the main target organ. A genetic risk score for lower eGFR was associated with clinically diagnosed CKD in 452,264 independent individuals. Colocalization analyses of associations with eGFR among 783,978 European-ancestry individuals and gene expression across 46 human tissues, including tubulo-interstitial and glomerular kidney compartments, identified 17 genes differentially expressed in kidney. Fine-mapping highlighted missense driver variants in 11 genes and kidney-specific regulatory variants. These results provide a comprehensive priority list of molecular targets for translational research.

Entities:  

Mesh:

Substances:

Year:  2019        PMID: 31152163      PMCID: PMC6698888          DOI: 10.1038/s41588-019-0407-x

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  93 in total

1.  Quantifying heterogeneity in a meta-analysis.

Authors:  Julian P T Higgins; Simon G Thompson
Journal:  Stat Med       Date:  2002-06-15       Impact factor: 2.373

Review 2.  The UMOD Locus: Insights into the Pathogenesis and Prognosis of Kidney Disease.

Authors:  Olivier Devuyst; Cristian Pattaro
Journal:  J Am Soc Nephrol       Date:  2017-11-27       Impact factor: 10.121

3.  Genome-Wide Association Study of Renal Function Traits: Results from the Japan Multi-Institutional Collaborative Cohort Study.

Authors:  Asahi Hishida; Masahiro Nakatochi; Masato Akiyama; Yoichiro Kamatani; Takeshi Nishiyama; Hidemi Ito; Isao Oze; Yuichiro Nishida; Megumi Hara; Naoyuki Takashima; Tanvir Chowdhury Turin; Miki Watanabe; Sadao Suzuki; Rie Ibusuki; Ippei Shimoshikiryo; Yohko Nakamura; Haruo Mikami; Hiroaki Ikezaki; Norihiro Furusyo; Kiyonori Kuriki; Kaori Endoh; Teruhide Koyama; Daisuke Matsui; Hirokazu Uemura; Kokichi Arisawa; Tae Sasakabe; Rieko Okada; Sayo Kawai; Mariko Naito; Yukihide Momozawa; Michiaki Kubo; Kenji Wakai
Journal:  Am J Nephrol       Date:  2018-05-18       Impact factor: 3.754

4.  Contribution of organic cation transporter 2 (OCT2) to cisplatin-induced nephrotoxicity.

Authors:  K K Filipski; R H Mathijssen; T S Mikkelsen; A H Schinkel; A Sparreboom
Journal:  Clin Pharmacol Ther       Date:  2009-07-22       Impact factor: 6.875

5.  IgA nephropathy in patients with congenital C9 deficiency.

Authors:  K Yoshioka; T Takemura; N Akano; M Okada; K Yagi; S Maki; S Inai; H Akita; Y Koitabashi; Y Takekoshi
Journal:  Kidney Int       Date:  1992-11       Impact factor: 10.612

6.  An atlas of genetic associations in UK Biobank.

Authors:  Oriol Canela-Xandri; Konrad Rawlik; Albert Tenesa
Journal:  Nat Genet       Date:  2018-10-22       Impact factor: 38.330

7.  1000 Genomes-based meta-analysis identifies 10 novel loci for kidney function.

Authors:  Mathias Gorski; Peter J van der Most; Alexander Teumer; Audrey Y Chu; Man Li; Vladan Mijatovic; Ilja M Nolte; Massimiliano Cocca; Daniel Taliun; Felicia Gomez; Yong Li; Bamidele Tayo; Adrienne Tin; Mary F Feitosa; Thor Aspelund; John Attia; Reiner Biffar; Murielle Bochud; Eric Boerwinkle; Ingrid Borecki; Erwin P Bottinger; Ming-Huei Chen; Vincent Chouraki; Marina Ciullo; Josef Coresh; Marilyn C Cornelis; Gary C Curhan; Adamo Pio d'Adamo; Abbas Dehghan; Laura Dengler; Jingzhong Ding; Gudny Eiriksdottir; Karlhans Endlich; Stefan Enroth; Tõnu Esko; Oscar H Franco; Paolo Gasparini; Christian Gieger; Giorgia Girotto; Omri Gottesman; Vilmundur Gudnason; Ulf Gyllensten; Stephen J Hancock; Tamara B Harris; Catherine Helmer; Simon Höllerer; Edith Hofer; Albert Hofman; Elizabeth G Holliday; Georg Homuth; Frank B Hu; Cornelia Huth; Nina Hutri-Kähönen; Shih-Jen Hwang; Medea Imboden; Åsa Johansson; Mika Kähönen; Wolfgang König; Holly Kramer; Bernhard K Krämer; Ashish Kumar; Zoltan Kutalik; Jean-Charles Lambert; Lenore J Launer; Terho Lehtimäki; Martin de Borst; Gerjan Navis; Morris Swertz; Yongmei Liu; Kurt Lohman; Ruth J F Loos; Yingchang Lu; Leo-Pekka Lyytikäinen; Mark A McEvoy; Christa Meisinger; Thomas Meitinger; Andres Metspalu; Marie Metzger; Evelin Mihailov; Paul Mitchell; Matthias Nauck; Albertine J Oldehinkel; Matthias Olden; Brenda Wjh Penninx; Giorgio Pistis; Peter P Pramstaller; Nicole Probst-Hensch; Olli T Raitakari; Rainer Rettig; Paul M Ridker; Fernando Rivadeneira; Antonietta Robino; Sylvia E Rosas; Douglas Ruderfer; Daniela Ruggiero; Yasaman Saba; Cinzia Sala; Helena Schmidt; Reinhold Schmidt; Rodney J Scott; Sanaz Sedaghat; Albert V Smith; Rossella Sorice; Benedicte Stengel; Sylvia Stracke; Konstantin Strauch; Daniela Toniolo; Andre G Uitterlinden; Sheila Ulivi; Jorma S Viikari; Uwe Völker; Peter Vollenweider; Henry Völzke; Dragana Vuckovic; Melanie Waldenberger; Jie Jin Wang; Qiong Yang; Daniel I Chasman; Gerard Tromp; Harold Snieder; Iris M Heid; Caroline S Fox; Anna Köttgen; Cristian Pattaro; Carsten A Böger; Christian Fuchsberger
Journal:  Sci Rep       Date:  2017-04-28       Impact factor: 4.379

8.  Systematic identification of trans eQTLs as putative drivers of known disease associations.

Authors:  Harm-Jan Westra; Marjolein J Peters; Tõnu Esko; Hanieh Yaghootkar; Claudia Schurmann; Johannes Kettunen; Mark W Christiansen; Bruce M Psaty; Samuli Ripatti; Alexander Teumer; Timothy M Frayling; Andres Metspalu; Joyce B J van Meurs; Lude Franke; Benjamin P Fairfax; Katharina Schramm; Joseph E Powell; Alexandra Zhernakova; Daria V Zhernakova; Jan H Veldink; Leonard H Van den Berg; Juha Karjalainen; Sebo Withoff; André G Uitterlinden; Albert Hofman; Fernando Rivadeneira; Peter A C 't Hoen; Eva Reinmaa; Krista Fischer; Mari Nelis; Lili Milani; David Melzer; Luigi Ferrucci; Andrew B Singleton; Dena G Hernandez; Michael A Nalls; Georg Homuth; Matthias Nauck; Dörte Radke; Uwe Völker; Markus Perola; Veikko Salomaa; Jennifer Brody; Astrid Suchy-Dicey; Sina A Gharib; Daniel A Enquobahrie; Thomas Lumley; Grant W Montgomery; Seiko Makino; Holger Prokisch; Christian Herder; Michael Roden; Harald Grallert; Thomas Meitinger; Konstantin Strauch; Yang Li; Ritsert C Jansen; Peter M Visscher; Julian C Knight
Journal:  Nat Genet       Date:  2013-09-08       Impact factor: 38.330

9.  The Cooperative Health Research in South Tyrol (CHRIS) study: rationale, objectives, and preliminary results.

Authors:  Cristian Pattaro; Martin Gögele; Deborah Mascalzoni; Roberto Melotti; Christine Schwienbacher; Alessandro De Grandi; Luisa Foco; Yuri D'Elia; Barbara Linder; Christian Fuchsberger; Cosetta Minelli; Clemens Egger; Lisa S Kofink; Stefano Zanigni; Torsten Schäfer; Maurizio F Facheris; Sigurður V Smárason; Alessandra Rossini; Andrew A Hicks; Helmuth Weiss; Peter P Pramstaller
Journal:  J Transl Med       Date:  2015-11-05       Impact factor: 5.531

10.  Bayesian test for colocalisation between pairs of genetic association studies using summary statistics.

Authors:  Claudia Giambartolomei; Damjan Vukcevic; Eric E Schadt; Lude Franke; Aroon D Hingorani; Chris Wallace; Vincent Plagnol
Journal:  PLoS Genet       Date:  2014-05-15       Impact factor: 5.917

View more
  179 in total

Review 1.  Using Genetic and Species Diversity to Tackle Kidney Disease.

Authors:  Michael R Garrett; Ron Korstanje
Journal:  Trends Genet       Date:  2020-04-30       Impact factor: 11.639

2.  A Mutation in γ-Adducin Impairs Autoregulation of Renal Blood Flow and Promotes the Development of Kidney Disease.

Authors:  Fan Fan; Aron M Geurts; Mallikarjuna R Pabbidi; Ying Ge; Chao Zhang; Shaoxun Wang; Yedan Liu; Wenjun Gao; Ya Guo; Longyang Li; Xiaochen He; Wenshan Lv; Yoshikazu Muroya; Takashi Hirata; Jeremy Prokop; George W Booz; Howard J Jacob; Richard J Roman
Journal:  J Am Soc Nephrol       Date:  2020-02-06       Impact factor: 10.121

3.  Systematic integrated analysis of genetic and epigenetic variation in diabetic kidney disease.

Authors:  Xin Sheng; Chengxiang Qiu; Hongbo Liu; Caroline Gluck; Jesse Y Hsu; Jiang He; Chi-Yuan Hsu; Daohang Sha; Matthew R Weir; Tamara Isakova; Dominic Raj; Hernan Rincon-Choles; Harold I Feldman; Raymond Townsend; Hongzhe Li; Katalin Susztak
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-03       Impact factor: 11.205

4.  Genome-Wide Association Studies of CKD and Related Traits.

Authors:  Adrienne Tin; Anna Köttgen
Journal:  Clin J Am Soc Nephrol       Date:  2020-05-14       Impact factor: 8.237

5.  Complexities of Understanding Function from CKD-Associated DNA Variants.

Authors:  Jennie Lin; Katalin Susztak
Journal:  Clin J Am Soc Nephrol       Date:  2020-06-08       Impact factor: 8.237

6.  Pulling the Hood off Genetic Susceptibility to Hypertensive Renal Disease.

Authors:  Isha S Dhande; Peter A Doris
Journal:  J Am Soc Nephrol       Date:  2020-03-02       Impact factor: 10.121

7.  A bidirectional Mendelian randomization study supports causal effects of kidney function on blood pressure.

Authors:  Zhi Yu; Josef Coresh; Guanghao Qi; Morgan Grams; Eric Boerwinkle; Harold Snieder; Alexander Teumer; Cristian Pattaro; Anna Köttgen; Nilanjan Chatterjee; Adrienne Tin
Journal:  Kidney Int       Date:  2020-05-23       Impact factor: 10.612

8.  Hypothyroidism and Kidney Function: A Mendelian Randomization Study.

Authors:  Christina Ellervik; Samia Mora; Paul M Ridker; Daniel I Chasman
Journal:  Thyroid       Date:  2020-02-14       Impact factor: 6.568

Review 9.  The Genetic Architecture of Kidney Disease.

Authors:  Martin R Pollak; David J Friedman
Journal:  Clin J Am Soc Nephrol       Date:  2020-01-28       Impact factor: 8.237

10.  Impaired renal hemodynamics and glomerular hyperfiltration contribute to hypertension-induced renal injury.

Authors:  Letao Fan; Wenjun Gao; Bond V Nguyen; Joshua R Jefferson; Yedan Liu; Fan Fan; Richard J Roman
Journal:  Am J Physiol Renal Physiol       Date:  2020-08-24
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.