Literature DB >> 35990931

SELF-SEMANTIC CONTOUR ADAPTATION FOR CROSS MODALITY BRAIN TUMOR SEGMENTATION.

Xiaofeng Liu1, Fangxu Xing1, Georges El Fakhri1, Jonghye Woo1.   

Abstract

Unsupervised domain adaptation (UDA) between two significantly disparate domains to learn high-level semantic alignment is a crucial yet challenging task. To this end, in this work, we propose exploiting low-level edge information to facilitate the adaptation as a precursor task, which has a small cross-domain gap, compared with semantic segmentation. The precise contour then provides spatial information to guide the semantic adaptation. More specifically, we propose a multi-task framework to learn a contouring adaptation network along with a semantic segmentation adaptation network, which takes both magnetic resonance imaging (MRI) slice and its initial edge map as input. These two networks are jointly trained with source domain labels, and the feature and edge map level adversarial learning is carried out for cross-domain alignment. In addition, self-entropy minimization is incorporated to further enhance segmentation performance. We evaluated our framework on the BraTS2018 database for cross-modality segmentation of brain tumors, showing the validity and superiority of our approach, compared with competing methods.

Entities:  

Keywords:  MR Imaging Modalities; Medical Image Segmentation; Unsupervised Domain Adaptation

Year:  2022        PMID: 35990931      PMCID: PMC9387767          DOI: 10.1109/isbi52829.2022.9761629

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  11 in total

1.  Breast pectoral muscle segmentation in mammograms using a modified holistically-nested edge detection network.

Authors:  Andrik Rampun; Karen López-Linares; Philip J Morrow; Bryan W Scotney; Hui Wang; Inmaculada Garcia Ocaña; Grégory Maclair; Reyer Zwiggelaar; Miguel A González Ballester; Iván Macía
Journal:  Med Image Anal       Date:  2019-06-20       Impact factor: 8.545

2.  Transferable Representation Learning with Deep Adaptation Networks.

Authors:  Mingsheng Long; Yue Cao; Zhangjie Cao; Jianmin Wang; Michael I Jordan
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2018-09-05       Impact factor: 6.226

3.  Unsupervised Bidirectional Cross-Modality Adaptation via Deeply Synergistic Image and Feature Alignment for Medical Image Segmentation.

Authors:  Cheng Chen; Qi Dou; Hao Chen; Jing Qin; Pheng Ann Heng
Journal:  IEEE Trans Med Imaging       Date:  2020-02-10       Impact factor: 10.048

4.  Deep Symmetric Adaptation Network for Cross-Modality Medical Image Segmentation.

Authors:  Xiaoting Han; Lei Qi; Qian Yu; Ziqi Zhou; Yefeng Zheng; Yinghuan Shi; Yang Gao
Journal:  IEEE Trans Med Imaging       Date:  2021-12-30       Impact factor: 10.048

5.  Ordinal Unsupervised Domain Adaptation With Recursively Conditional Gaussian Imposed Variational Disentanglement.

Authors:  Xiaofeng Liu; Site Li; Yubin Ge; Pengyi Ye; Jane You; Jun Lu
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2022-06-15       Impact factor: 6.226

6.  Unsupervised Domain Adaptation for Segmentation with Black-box Source Model.

Authors:  Xiaofeng Liu; Chaehwa Yoo; Fangxu Xing; C-C Jay Kuo; Georges El Fakhri; Je-Won Kang; Jonghye Woo
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2022-04-04

7.  Adapting Off-the-Shelf Source Segmenter for Target Medical Image Segmentation.

Authors:  Xiaofeng Liu; Fangxu Xing; Chao Yang; Georges El Fakhri; Jonghye Woo
Journal:  Med Image Comput Comput Assist Interv       Date:  2021-09-21

Review 8.  The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).

Authors:  Bjoern H Menze; Andras Jakab; Stefan Bauer; Jayashree Kalpathy-Cramer; Keyvan Farahani; Justin Kirby; Yuliya Burren; Nicole Porz; Johannes Slotboom; Roland Wiest; Levente Lanczi; Elizabeth Gerstner; Marc-André Weber; Tal Arbel; Brian B Avants; Nicholas Ayache; Patricia Buendia; D Louis Collins; Nicolas Cordier; Jason J Corso; Antonio Criminisi; Tilak Das; Hervé Delingette; Çağatay Demiralp; Christopher R Durst; Michel Dojat; Senan Doyle; Joana Festa; Florence Forbes; Ezequiel Geremia; Ben Glocker; Polina Golland; Xiaotao Guo; Andac Hamamci; Khan M Iftekharuddin; Raj Jena; Nigel M John; Ender Konukoglu; Danial Lashkari; José Antonió Mariz; Raphael Meier; Sérgio Pereira; Doina Precup; Stephen J Price; Tammy Riklin Raviv; Syed M S Reza; Michael Ryan; Duygu Sarikaya; Lawrence Schwartz; Hoo-Chang Shin; Jamie Shotton; Carlos A Silva; Nuno Sousa; Nagesh K Subbanna; Gabor Szekely; Thomas J Taylor; Owen M Thomas; Nicholas J Tustison; Gozde Unal; Flor Vasseur; Max Wintermark; Dong Hye Ye; Liang Zhao; Binsheng Zhao; Darko Zikic; Marcel Prastawa; Mauricio Reyes; Koen Van Leemput
Journal:  IEEE Trans Med Imaging       Date:  2014-12-04       Impact factor: 10.048

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