Literature DB >> 34734216

Adapting Off-the-Shelf Source Segmenter for Target Medical Image Segmentation.

Xiaofeng Liu1, Fangxu Xing1, Chao Yang2, Georges El Fakhri1, Jonghye Woo1.   

Abstract

Unsupervised domain adaptation (UDA) aims to transfer knowledge learned from a labeled source domain to an unlabeled and unseen target domain, which is usually trained on data from both domains. Access to the source domain data at the adaptation stage, however, is often limited, due to data storage or privacy issues. To alleviate this, in this work, we target source free UDA for segmentation, and propose to adapt an "off-the-shelf" segmentation model pre-trained in the source domain to the target domain, with an adaptive batch-wise normalization statistics adaptation framework. Specifically, the domain-specific low-order batch statistics, i.e., mean and variance, are gradually adapted with an exponential momentum decay scheme, while the consistency of domain shareable high-order batch statistics, i.e., scaling and shifting parameters, is explicitly enforced by our optimization objective. The transferability of each channel is adaptively measured first from which to balance the contribution of each channel. Moreover, the proposed source free UDA framework is orthogonal to unsupervised learning methods, e.g., self-entropy minimization, which can thus be simply added on top of our framework. Extensive experiments on the BraTS 2018 database show that our source free UDA framework outperformed existing source-relaxed UDA methods for the cross-subtype UDA segmentation task and yielded comparable results for the cross-modality UDA segmentation task, compared with a supervised UDA methods with the source data.

Entities:  

Year:  2021        PMID: 34734216      PMCID: PMC8562716          DOI: 10.1007/978-3-030-87196-3_51

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  6 in total

1.  Automated interpretation of congenital heart disease from multi-view echocardiograms.

Authors:  Jing Wang; Xiaofeng Liu; Fangyun Wang; Lin Zheng; Fengqiao Gao; Hanwen Zhang; Xin Zhang; Wanqing Xie; Binbin Wang
Journal:  Med Image Anal       Date:  2020-12-26       Impact factor: 8.545

2.  Symmetric-Constrained Irregular Structure Inpainting for Brain MRI Registration with Tumor Pathology.

Authors:  Xiaofeng Liu; Fangxu Xing; Chao Yang; C-C Jay Kuo; Georges El Fakhri; Jonghye Woo
Journal:  Brainlesion       Date:  2021-03-27

3.  A Survey of Unsupervised Deep Domain Adaptation.

Authors:  Garrett Wilson; Diane J Cook
Journal:  ACM Trans Intell Syst Technol       Date:  2020-07-05       Impact factor: 4.654

Review 4.  The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).

Authors:  Bjoern H Menze; Andras Jakab; Stefan Bauer; Jayashree Kalpathy-Cramer; Keyvan Farahani; Justin Kirby; Yuliya Burren; Nicole Porz; Johannes Slotboom; Roland Wiest; Levente Lanczi; Elizabeth Gerstner; Marc-André Weber; Tal Arbel; Brian B Avants; Nicholas Ayache; Patricia Buendia; D Louis Collins; Nicolas Cordier; Jason J Corso; Antonio Criminisi; Tilak Das; Hervé Delingette; Çağatay Demiralp; Christopher R Durst; Michel Dojat; Senan Doyle; Joana Festa; Florence Forbes; Ezequiel Geremia; Ben Glocker; Polina Golland; Xiaotao Guo; Andac Hamamci; Khan M Iftekharuddin; Raj Jena; Nigel M John; Ender Konukoglu; Danial Lashkari; José Antonió Mariz; Raphael Meier; Sérgio Pereira; Doina Precup; Stephen J Price; Tammy Riklin Raviv; Syed M S Reza; Michael Ryan; Duygu Sarikaya; Lawrence Schwartz; Hoo-Chang Shin; Jamie Shotton; Carlos A Silva; Nuno Sousa; Nagesh K Subbanna; Gabor Szekely; Thomas J Taylor; Owen M Thomas; Nicholas J Tustison; Gozde Unal; Flor Vasseur; Max Wintermark; Dong Hye Ye; Liang Zhao; Binsheng Zhao; Darko Zikic; Marcel Prastawa; Mauricio Reyes; Koen Van Leemput
Journal:  IEEE Trans Med Imaging       Date:  2014-12-04       Impact factor: 10.048

  6 in total
  5 in total

1.  Feasibility study of clinical target volume definition for soft-tissue sarcoma using muscle fiber orientations derived from diffusion tensor imaging.

Authors:  Nadya Shusharina; Xiaofeng Liu; Jaume Coll-Font; Anna Foster; Georges El Fakhri; Jonghye Woo; Thomas Bortfeld; Christopher Nguyen
Journal:  Phys Med Biol       Date:  2022-07-22       Impact factor: 4.174

2.  Unsupervised Domain Adaptation for Segmentation with Black-box Source Model.

Authors:  Xiaofeng Liu; Chaehwa Yoo; Fangxu Xing; C-C Jay Kuo; Georges El Fakhri; Je-Won Kang; Jonghye Woo
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2022-04-04

3.  SELF-SEMANTIC CONTOUR ADAPTATION FOR CROSS MODALITY BRAIN TUMOR SEGMENTATION.

Authors:  Xiaofeng Liu; Fangxu Xing; Georges El Fakhri; Jonghye Woo
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2022-04-26

4.  Unsupervised Black-Box Model Domain Adaptation for Brain Tumor Segmentation.

Authors:  Xiaofeng Liu; Chaehwa Yoo; Fangxu Xing; C-C Jay Kuo; Georges El Fakhri; Je-Won Kang; Jonghye Woo
Journal:  Front Neurosci       Date:  2022-06-02       Impact factor: 5.152

5.  Brain MR Atlas Construction Using Symmetric Deep Neural Inpainting.

Authors:  Fangxu Xing; Xiaofeng Liu; C-C Jay Kuo; Georges El Fakhri; Jonghye Woo
Journal:  IEEE J Biomed Health Inform       Date:  2022-07-01       Impact factor: 7.021

  5 in total

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