| Literature DB >> 35979964 |
Tao Chen1, Zhi-Hai Su1, Zheng Liu1, Min Wang1, Zhi-Fei Cui1, Lei Zhao2, Lian-Jun Yang1, Wei-Cong Zhang1, Xiang Liu1, Jin Liu3, Shu-Yuan Tan4, Shao-Lin Li3, Qian-Jin Feng2, Shu-Mao Pang5, Hai Lu1.
Abstract
OBJECTIVE: 3D reconstruction of lumbar intervertebral foramen (LIVF) has been beneficial in evaluating surgical trajectory. Still, the current methods of reconstructing the 3D LIVF model are mainly based on manual segmentation, which is laborious and time-consuming. This study aims to explore the feasibility of automatically segmenting lumbar spinal structures and increasing the speed and accuracy of 3D lumbar intervertebral foramen (LIVF) reconstruction on magnetic resonance image (MRI) at the L4-5 level.Entities:
Keywords: 3D reconstruction; Automated magnetic resonance image segmentation; Deep learning; Lumbar intervertebral foramen
Mesh:
Year: 2022 PMID: 35979964 PMCID: PMC9483078 DOI: 10.1111/os.13431
Source DB: PubMed Journal: Orthop Surg ISSN: 1757-7853 Impact factor: 2.279
Dataset demographic breakdown
| Sequence and Parameters | |
|---|---|
| 3D T2‐SPACE | |
| No. of participants | |
| Men | 52 (52) |
| Women | 48 (48) |
| Age (years) | 42.2 (22–82) |
| Men participants | 40.7 (22–82) |
| Women participants | 43.9 (23–74) |
| Body mass index (kg/m2) | 22.70 (22.07, 23.33) |
Notes: Unless otherwise specified, data are means, with ranges in parentheses. 3D T2‐SPACE = 3D T2‐weighted sampling perfection with application‐optimized contrast with different flip‐angle evolutions.
3D T2‐weighted sampling perfection with application‐optimized contrast with different flip‐angle evolutions sequence with the following parameters: repetition time msec/echo time msec, 2800.0/189.0; flip angle, 45°; field of view, 240 × 240 mm; matrix, 320 × 320; section thickness, 0.8 mm; bandwidth, 579 kHz; and final image resolution, 0.8 × 0.8 × 0.8 mm.
Data are numbers of patients, with percentages in parentheses.
Data are means, with 95% confidence intervals in parentheses.
Fig. 1The 3D‐UNet architecture. The blue boxes denote feature maps. The number of channels is denoted above each feature map. The arrows of different colors indicate different operations
Fig. 2The LIVF dimensions were measured at the lateral views. The LIVF height (FH) was defined as the longest distance between the cranio‐caudal boundary (green line); the width (FW) was defined as the shortest distance between the postero‐inferior corner of the proximal vertebrae and the opposing boundary (blue line); and the area (FA) was drawn with the temporary boundaries set at 0.5 mm increments (red circle) according to the 3D LIVF model outline (red line)
Results of automatic segmentation performances of the dataset
| Performances and dataset | DSC | Precision | Recall | ||||||
|---|---|---|---|---|---|---|---|---|---|
| VBS | IVD | VBS and IVD | VBS | IVD | VBS and IVD | VBS | IVD | VBS and IVD | |
| Training | 0.942 (0.941, 0.943) | 0.929 (0.927, 0.932) | 0.938 (0.936, 0.939) | 0.942 (0.941, 0.944) | 0.932 (0.928, 0.937) | 0.939 (0.937, 0.941) | 0.942 (0.941, 0.943) | 0.928 (0.924, 0.931) | 0.937 (0.936, 0.939) |
| Validation | 0.927 (0.924, 0.930) | 0.908 (0.894, 0.921) | 0.920 (0.914, 0.927) | 0.929 (0.924, 0.934) | 0.910 (0.890, 0.931) | 0.923 (0.914, 0.931) | 0.925 (0.920, 0.930) | 0.909 (0.894, 0.923) | 0.920 (0.913, 0.926) |
| Test | 0.925 (0.919, 0.930) | 0.904 (0.892, 0.916) | 0.918 (0.910, 0.926) | 0.927 (0.920, 0.934) | 0.911 (0.895, 0.927) | 0.922 (0.912, 0.932) | 0.924 (0.919, 0.929) | 0.904 (0.891, 0.918) | 0.917 (0.910, 0.925) |
Note: Data are means of 5‐Fold Cross‐validation scores, with 95% confidence intervals in parentheses.
Abbreviations: DSC, Dice similarity coefficient; IVD, intervertebral discs; VBS, vertebra bone structures.
The mean accuracy results of all spinal structures at the test dataset
| Performances and test dataset | Diagnosis | |||
|---|---|---|---|---|
| Healthy | SS | DH | SS and DH | |
| DSC | 0.922 | 0.932 | 0.914 | 0.918 |
| Precision | 0.927 | 0.944 | 0.914 | 0.925 |
| Recall | 0.918 | 0.920 | 0.918 | 0.915 |
Note: At 100 L4/5 levels, there were 29 healthy levels, 71 unhealthy levels with spinal stenosis: 3 levels, disc herniation: 42 levels, or both: 26 levels.
Abbreviations: DH, disc herniation; SS, spinal stenosis; SS and DH, spinal stenosis and disc herniation.
Fig. 3Example 3D LIVF models show comparison between automatic segmentation, (A–C), and manual segmentation, (B–D). (A), (B) in left views and (C), (D) in right views
Fig. 4Scatterplots (left) and Bland–Altman plots (right) show comparison of FA meansurements of L4‐5 test dataset produced from manual and automatic segmentation methods. FA = foraminal area
Fig. 5Scatterplots (left) and Bland–Altman plots (right) show comparison of FH meansurements of L4‐5 test dataset produced from manual and automatic segmentation methods. FH = foraminal height
Fig. 6Scatterplots (left) and Bland–Altman plots (right) show comparison of FW meansurements of L4‐5 test dataset produced from manual and automatic segmentation methods. FW = foraminal width