Literature DB >> 35978051

Genome characterization and CRISPR-Cas9 editing of a human neocentromere.

Antonio Palazzo1, Ilaria Piccolo2, Crescenzio Francesco Minervini3, Stefania Purgato4, Oronzo Capozzi2, Pietro D'Addabbo2, Cosimo Cumbo3, Francesco Albano3, Mariano Rocchi2, Claudia Rita Catacchio5.   

Abstract

The maintenance of genome integrity is ensured by proper chromosome inheritance during mitotic and meiotic cell divisions. The chromosomal counterpart responsible for chromosome segregation to daughter cells is the centromere, at which the spindle apparatus attaches through the kinetochore. Although all mammalian centromeres are primarily composed of megabase-long repetitive sequences, satellite-free human neocentromeres have been described. Neocentromeres and evolutionary new centromeres have revolutionized traditional knowledge about centromeres. Over the past 20 years, insights have been gained into their organization, but in spite of these advancements, the mechanisms underlying their formation and evolution are still unclear. Today, through modern and increasingly accessible genome editing and long-read sequencing techniques, research in this area is undergoing a sudden acceleration. In this article, we describe the primary sequence of a previously described human chromosome 3 neocentromere and observe its possible evolution and repair results after a chromosome breakage induced through CRISPR-Cas9 technologies. Our data represent an exciting advancement in the field of centromere/neocentromere evolution and chromosome stability.
© 2022. The Author(s).

Entities:  

Keywords:  CRISPR-Cas9; Isochromosome; Long-read sequencing; Neocentromere

Year:  2022        PMID: 35978051     DOI: 10.1007/s00412-022-00779-y

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   2.919


  55 in total

1.  Analphoid de novo marker chromosome inv dup(3)(q28qter) with neocentromere in a dysmorphic and developmentally retarded girl.

Authors:  G Barbi; C Spaich; S Adolph; H Kehrer-Sawatzki
Journal:  J Med Genet       Date:  2003-03       Impact factor: 6.318

Review 2.  Neocentromeres and epigenetically inherited features of centromeres.

Authors:  Laura S Burrack; Judith Berman
Journal:  Chromosome Res       Date:  2012-07       Impact factor: 5.239

3.  Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome.

Authors:  Mark Bieda; Xiaoqin Xu; Michael A Singer; Roland Green; Peggy J Farnham
Journal:  Genome Res       Date:  2006-04-10       Impact factor: 9.043

4.  Retroelements (LINEs and SINEs) in vole genomes: differential distribution in the constitutive heterochromatin.

Authors:  M J Acosta; J A Marchal; C H Fernández-Espartero; M Bullejos; A Sánchez
Journal:  Chromosome Res       Date:  2008-10-06       Impact factor: 5.239

5.  Coexistence of neocentromeric marker 3q and trisomy 3 in two different tissues in a 3-year-old boy with peripheral T-cell lymphoma: support for a gene dosage effect hypothesis.

Authors:  Jacqueline R Batanian; Kristen Bernreuter; Lori Koslosky; John L Frater
Journal:  Cancer Genet Cytogenet       Date:  2006-10-15

6.  Characterization of chimpanzee-hamster hybrids by chromosome painting.

Authors:  N Archidiacono; R Marzella; P Finelli; R Antonacci; C Jones; M Rocchi
Journal:  Somat Cell Mol Genet       Date:  1994-09

7.  Human centromere repositioning "in progress".

Authors:  David J Amor; Karen Bentley; Jacinta Ryan; Jo Perry; Lee Wong; Howard Slater; K H Andy Choo
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-14       Impact factor: 11.205

8.  An unusual dicentric Y chromosome with a functional centromere with no detectable alpha-satellite.

Authors:  N Bukvic; F Susca; M Gentile; E Tangari; A Ianniruberto; G Guanti
Journal:  Hum Genet       Date:  1996-04       Impact factor: 4.132

Review 9.  Neocentromeres: role in human disease, evolution, and centromere study.

Authors:  David J Amor; K H Andy Choo
Journal:  Am J Hum Genet       Date:  2002-08-26       Impact factor: 11.025

10.  Simple and rapid in vivo generation of chromosomal rearrangements using CRISPR/Cas9 technology.

Authors:  Rafael B Blasco; Elif Karaca; Chiara Ambrogio; Taek-Chin Cheong; Emre Karayol; Valerio G Minero; Claudia Voena; Roberto Chiarle
Journal:  Cell Rep       Date:  2014-11-13       Impact factor: 9.423

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