Literature DB >> 18836842

Retroelements (LINEs and SINEs) in vole genomes: differential distribution in the constitutive heterochromatin.

M J Acosta1, J A Marchal, C H Fernández-Espartero, M Bullejos, A Sánchez.   

Abstract

The chromosomal distribution of mobile genetic elements is scarcely known in Arvicolinae species, but could be of relevance to understand the origin and complex evolution of the sex chromosome heterochromatin. In this work we cloned two retrotransposon sequences, L1 and SINE-B1, from the genome of Chionomys nivalis and investigated their chromosomal distribution on several arvicoline species. Our results demonstrate first that both retroelements are the most abundant repeated DNA sequences in the genome of these species. L1 elements, in most species, are highly accumulated in the sex chromosomes compared to the autosomes. This favoured L1 insertion could have played an important role in the origin of the enlarged heterochromatic blocks existing in the sex chromosomes of some Microtus species. Also, we propose that L1 accumulation on the X heterochromatin could have been the consequence of different, independent and rapid amplification processes acting in each species. SINE elements, however, were completely lacking from the constitutive heterochromatin, either in autosomes or in the heterochromatic blocks of sex chromosomes. These data could indicate that some SINE elements are incompatible with the formation of heterochromatic complexes and hence are necessarily missing from the constitutive heterochromatin.

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Year:  2008        PMID: 18836842     DOI: 10.1007/s10577-008-1253-3

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  59 in total

1.  LINE-1 elements and X chromosome inactivation: a function for "junk" DNA?

Authors:  M F Lyon
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

2.  LINEs mobilize SINEs in the eel through a shared 3' sequence.

Authors:  Masaki Kajikawa; Norihiro Okada
Journal:  Cell       Date:  2002-11-01       Impact factor: 41.582

3.  X chromosome painting in Microtus: origin and evolution of the giant sex chromosomes.

Authors:  J A Marchal; M J Acosta; H Nietzel; K Sperling; M Bullejos; R Díaz de la Guardia; A Sánchez
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

4.  Y chromosomes: born to be destroyed.

Authors:  Sigrid Steinemann; Manfred Steinemann
Journal:  Bioessays       Date:  2005-10       Impact factor: 4.345

5.  Differential distribution of long and short interspersed element sequences in the mouse genome: chromosome karyotyping by fluorescence in situ hybridization.

Authors:  A L Boyle; S G Ballard; D C Ward
Journal:  Proc Natl Acad Sci U S A       Date:  1990-10       Impact factor: 11.205

6.  Phylogenetic history of LINE-1 among arvicolid rodents.

Authors:  W S Modi
Journal:  Mol Biol Evol       Date:  1996-05       Impact factor: 16.240

7.  Molecular phylogeny of the speciose vole genus Microtus (Arvicolinae, Rodentia) inferred from mitochondrial DNA sequences.

Authors:  Maarit Jaarola; Natália Martínková; Islam Gündüz; Cecilia Brunhoff; Jan Zima; Adam Nadachowski; Giovanni Amori; Nina S Bulatova; Basil Chondropoulos; Stella Fraguedakis-Tsolis; Jorge González-Esteban; María José López-Fuster; Andrei S Kandaurov; Haluk Kefelioğlu; Maria da Luz Mathias; Idoia Villate; Jeremy B Searle
Journal:  Mol Phylogenet Evol       Date:  2004-12       Impact factor: 4.286

8.  A rapid, simple and reliable combined method for G-banding mammalian and human chromosomes.

Authors:  M Burgos; R Jiménez; R Díaz de la Guardia
Journal:  Stain Technol       Date:  1986-09

9.  Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:  Richard A Gibbs; George M Weinstock; Michael L Metzker; Donna M Muzny; Erica J Sodergren; Steven Scherer; Graham Scott; David Steffen; Kim C Worley; Paula E Burch; Geoffrey Okwuonu; Sandra Hines; Lora Lewis; Christine DeRamo; Oliver Delgado; Shannon Dugan-Rocha; George Miner; Margaret Morgan; Alicia Hawes; Rachel Gill; Robert A Holt; Mark D Adams; Peter G Amanatides; Holly Baden-Tillson; Mary Barnstead; Soo Chin; Cheryl A Evans; Steve Ferriera; Carl Fosler; Anna Glodek; Zhiping Gu; Don Jennings; Cheryl L Kraft; Trixie Nguyen; Cynthia M Pfannkoch; Cynthia Sitter; Granger G Sutton; J Craig Venter; Trevor Woodage; Douglas Smith; Hong-Mei Lee; Erik Gustafson; Patrick Cahill; Arnold Kana; Lynn Doucette-Stamm; Keith Weinstock; Kim Fechtel; Robert B Weiss; Diane M Dunn; Eric D Green; Robert W Blakesley; Gerard G Bouffard; Pieter J De Jong; Kazutoyo Osoegawa; Baoli Zhu; Marco Marra; Jacqueline Schein; Ian Bosdet; Chris Fjell; Steven Jones; Martin Krzywinski; Carrie Mathewson; Asim Siddiqui; Natasja Wye; John McPherson; Shaying Zhao; Claire M Fraser; Jyoti Shetty; Sofiya Shatsman; Keita Geer; Yixin Chen; Sofyia Abramzon; William C Nierman; Paul H Havlak; Rui Chen; K James Durbin; Amy Egan; Yanru Ren; Xing-Zhi Song; Bingshan Li; Yue Liu; Xiang Qin; Simon Cawley; Kim C Worley; A J Cooney; Lisa M D'Souza; Kirt Martin; Jia Qian Wu; Manuel L Gonzalez-Garay; Andrew R Jackson; Kenneth J Kalafus; Michael P McLeod; Aleksandar Milosavljevic; Davinder Virk; Andrei Volkov; David A Wheeler; Zhengdong Zhang; Jeffrey A Bailey; Evan E Eichler; Eray Tuzun; Ewan Birney; Emmanuel Mongin; Abel Ureta-Vidal; Cara Woodwark; Evgeny Zdobnov; Peer Bork; Mikita Suyama; David Torrents; Marina Alexandersson; Barbara J Trask; Janet M Young; Hui Huang; Huajun Wang; Heming Xing; Sue Daniels; Darryl Gietzen; Jeanette Schmidt; Kristian Stevens; Ursula Vitt; Jim Wingrove; Francisco Camara; M Mar Albà; Josep F Abril; Roderic Guigo; Arian Smit; Inna Dubchak; Edward M Rubin; Olivier Couronne; Alexander Poliakov; Norbert Hübner; Detlev Ganten; Claudia Goesele; Oliver Hummel; Thomas Kreitler; Young-Ae Lee; Jan Monti; Herbert Schulz; Heike Zimdahl; Heinz Himmelbauer; Hans Lehrach; Howard J Jacob; Susan Bromberg; Jo Gullings-Handley; Michael I Jensen-Seaman; Anne E Kwitek; Jozef Lazar; Dean Pasko; Peter J Tonellato; Simon Twigger; Chris P Ponting; Jose M Duarte; Stephen Rice; Leo Goodstadt; Scott A Beatson; Richard D Emes; Eitan E Winter; Caleb Webber; Petra Brandt; Gerald Nyakatura; Margaret Adetobi; Francesca Chiaromonte; Laura Elnitski; Pallavi Eswara; Ross C Hardison; Minmei Hou; Diana Kolbe; Kateryna Makova; Webb Miller; Anton Nekrutenko; Cathy Riemer; Scott Schwartz; James Taylor; Shan Yang; Yi Zhang; Klaus Lindpaintner; T Dan Andrews; Mario Caccamo; Michele Clamp; Laura Clarke; Valerie Curwen; Richard Durbin; Eduardo Eyras; Stephen M Searle; Gregory M Cooper; Serafim Batzoglou; Michael Brudno; Arend Sidow; Eric A Stone; J Craig Venter; Bret A Payseur; Guillaume Bourque; Carlos López-Otín; Xose S Puente; Kushal Chakrabarti; Sourav Chatterji; Colin Dewey; Lior Pachter; Nicolas Bray; Von Bing Yap; Anat Caspi; Glenn Tesler; Pavel A Pevzner; David Haussler; Krishna M Roskin; Robert Baertsch; Hiram Clawson; Terrence S Furey; Angie S Hinrichs; Donna Karolchik; William J Kent; Kate R Rosenbloom; Heather Trumbower; Matt Weirauch; David N Cooper; Peter D Stenson; Bin Ma; Michael Brent; Manimozhiyan Arumugam; David Shteynberg; Richard R Copley; Martin S Taylor; Harold Riethman; Uma Mudunuri; Jane Peterson; Mark Guyer; Adam Felsenfeld; Susan Old; Stephen Mockrin; Francis Collins
Journal:  Nature       Date:  2004-04-01       Impact factor: 49.962

10.  LINE-mediated retrotransposition of marked Alu sequences.

Authors:  Marie Dewannieux; Cécile Esnault; Thierry Heidmann
Journal:  Nat Genet       Date:  2003-08-03       Impact factor: 38.330

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  19 in total

1.  Rapid, independent, and extensive amplification of telomeric repeats in pericentromeric regions in karyotypes of arvicoline rodents.

Authors:  M Th Rovatsos; J A Marchal; I Romero-Fernández; F J Fernández; E B Giagia-Athanosopoulou; Antonio Sánchez
Journal:  Chromosome Res       Date:  2011-10-07       Impact factor: 5.239

2.  Epigenetic modifications in sex heterochromatin of vole rodents.

Authors:  I Romero-Fernández; C S Casas-Delucchi; M Cano-Linares; M Arroyo; A Sánchez; M C Cardoso; J A Marchal
Journal:  Chromosoma       Date:  2014-12-21       Impact factor: 4.316

3.  LINE-1 retrotransposons: from 'parasite' sequences to functional elements.

Authors:  Ana Paço; Filomena Adega; Raquel Chaves
Journal:  J Appl Genet       Date:  2014-08-09       Impact factor: 3.240

4.  LINE-1 distribution in six rodent genomes follow a species-specific pattern.

Authors:  A Vieira-da-Silva; F Adega; H Guedes-Pinto; R Chaves
Journal:  J Genet       Date:  2016-03       Impact factor: 1.166

5.  Centromeric enrichment of LINE-1 retrotransposons and its significance for the chromosome evolution of Phyllostomid bats.

Authors:  Cibele Gomes de Sotero-Caio; Diogo Cavalcanti Cabral-de-Mello; Merilane da Silva Calixto; Guilherme Targino Valente; Cesar Martins; Vilma Loreto; Maria José de Souza; Neide Santos
Journal:  Chromosome Res       Date:  2017-09-15       Impact factor: 5.239

6.  Characterization of the satellite DNA Msat-160 from species of Terricola (Microtus) and Arvicola (Rodentia, Arvicolinae).

Authors:  Manuel J Acosta; Juan A Marchal; Cecilia Fernández-Espartero; Ismael Romero-Fernández; Michail T Rovatsos; Eva B Giagia-Athanasopoulou; Ekaterina Gornung; Riccardo Castiglia; Antonio Sánchez
Journal:  Genetica       Date:  2010-09-10       Impact factor: 1.082

7.  A synaptonemal complex-derived mechanism for meiotic segregation precedes the evolutionary loss of homology between sex chromosomes in arvicolid mammals.

Authors:  Roberto de la Fuente; Antonio Sánchez; Juan Alberto Marchal; Alberto Viera; María Teresa Parra; Julio S Rufas; Jesús Page
Journal:  Chromosoma       Date:  2012-05-03       Impact factor: 4.316

8.  Molecular cytogenetic characterization of the Amazon River dolphin Inia geoffrensis.

Authors:  Heidi L Bonifácio; Vera M F da Silva; Anthony R Martin; Eliana Feldberg
Journal:  Genetica       Date:  2012-09-26       Impact factor: 1.082

9.  Relationship Between Sequence Homology, Genome Architecture, and Meiotic Behavior of the Sex Chromosomes in North American Voles.

Authors:  Beth L Dumont; Christina L Williams; Bee Ling Ng; Valerie Horncastle; Carol L Chambers; Lisa A McGraw; David Adams; Trudy F C Mackay; Matthew Breen
Journal:  Genetics       Date:  2018-07-12       Impact factor: 4.562

10.  Molecular Composition of Heterochromatin and Its Contribution to Chromosome Variation in the Microtus thomasi/Microtus atticus Species Complex.

Authors:  Michail Rovatsos; Juan Alberto Marchal; Eva Giagia-Athanasopoulou; Antonio Sánchez
Journal:  Genes (Basel)       Date:  2021-05-25       Impact factor: 4.096

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