| Literature DB >> 35974837 |
Farid N Naghiyev1, Victor N Khrustalev2,3, Ekaterina V Dobrokhotova3, Mehmet Akkurt4, Ali N Khalilov5,1, Ajaya Bhattarai6, İbrahim G Mamedov1.
Abstract
In the title compound, C19H13BrN2O, the pyridine ring is essentially planar [maximum deviation = 0.024 (4) Å for the N atom] and makes dihedral angles of 74.6 (2) and 65.8 (2)°, respectively, with the phenyl and bromo-phenyl rings, which subtend a dihedral angle of 63.1 (2)°. In the crystal, mol-ecules are connected along the c-axis direction via C-Br⋯π inter-actions, generating zigzag chains parallel to the (010) plane. C-H⋯N and C-H⋯O hydrogen-bonding inter-actions further connect the mol-ecules, forming a three-dimensional network and reinforcing the mol-ecular packing. Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H⋯H (36.2%), C⋯H/H⋯C (21.6%), N⋯H/H⋯N (12.2%), and Br⋯H/H⋯Br (10.8%) inter-actions. © Naghiyev et al. 2022.Entities:
Keywords: 1,6-dihydropyridine; C—Br⋯π interactions; Hirshfeld surface analysis; crystal structure; hydrogen bond
Year: 2022 PMID: 35974837 PMCID: PMC9361383 DOI: 10.1107/S2056989022006466
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The reaction of acetoacetanilide with 3-oxo-3-arylpropanenitriles.
Figure 2The molecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level.
Figure 3A general view of the C—H⋯N, C—H⋯O hydrogen bonds and C—Br⋯π interactions of the title compound. Symmetry codes: (i) x + , −y − , z − 1; (ii) −x + , y + , z + ; (iii) −x + 1, −y + 1, z + ; (iv) − x, − + y, + z.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C16—H16⋯N2i | 0.95 | 2.55 | 3.234 (6) | 129 |
| C17—H17⋯O1ii | 0.95 | 2.56 | 3.342 (6) | 140 |
| C20—H20⋯O1iii | 0.95 | 2.40 | 3.256 (6) | 150 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 4Packing view of the title compound along the a axis showing the C—Br⋯π interactions as dashed lines.
Figure 5Packing view of the title compound along the b axis with the C—Br⋯π interactions indicated by dashed lines.
Figure 6(a) Front and (b) back sides of the three-dimensional Hirshfeld surface of the title compound mapped over d norm, with a fixed colour scale of −0.2437 to 1.2589 a.u.
Figure 7The two-dimensional fingerprint plots of the title compound, showing (a) all interactions, and delineated into (b) H⋯H, (c) C⋯H/H⋯C, (d) N⋯H/H⋯N and (e) Br⋯H/H⋯Br interactions. [d e and d i represent the distances from a point on the Hirshfeld surface to the nearest atoms outside (external) and inside (internal) the surface, respectively].
Summary of short interatomic contacts (Å) in the title compound
| Contact | Distance | Symmetry operation |
|---|---|---|
| H19⋯H13 | 2.59 |
|
| H17⋯O1 | 2.56 |
|
| O1⋯H20 | 2.40 | 1 − |
| N2⋯H16 | 2.55 |
|
| C9⋯H11 | 2.99 | 1 − |
| C10⋯H13 | 3.03 |
|
Experimental details
| Crystal data | |
| Chemical formula | C19H13BrN2O |
|
| 365.21 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 100 |
|
| 15.58979 (16), 10.33883 (10), 9.91195 (9) |
|
| 1597.61 (3) |
|
| 4 |
| Radiation type | Cu |
| μ (mm−1) | 3.55 |
| Crystal size (mm) | 0.25 × 0.24 × 0.21 |
| Data collection | |
| Diffractometer | XtaLAB Synergy, Dualflex, HyPix |
| Absorption correction | Multi-scan ( |
|
| 0.413, 0.462 |
| No. of measured, independent and observed [ | 45325, 3359, 3339 |
|
| 0.047 |
| (sin θ/λ)max (Å−1) | 0.648 |
| Refinement | |
|
| 0.037, 0.099, 1.05 |
| No. of reflections | 3359 |
| No. of parameters | 209 |
| No. of restraints | 1 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 1.27, −0.89 |
| Absolute structure | Flack |
| Absolute structure parameter | −0.012 (18) |
Computer programs: CrysAlis PRO (Rigaku OD, 2021 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL (Sheldrick, 2015b ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2020 ▸).
| C19H13BrN2O | |
| Cu | |
| Orthorhombic, | Cell parameters from 35934 reflections |
| θ = 2.7–79.0° | |
| µ = 3.55 mm−1 | |
| Prism, colourless | |
| 0.25 × 0.24 × 0.21 mm | |
| XtaLAB Synergy, Dualflex, HyPix diffractometer | 3339 reflections with |
| Radiation source: micro-focus sealed X-ray tube | |
| φ and ω scans | θmax = 88.3°, θmin = 5.1° |
| Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2021) | |
| 45325 measured reflections | |
| 3359 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3359 reflections | Δρmax = 1.27 e Å−3 |
| 209 parameters | Δρmin = −0.89 e Å−3 |
| 1 restraint | Absolute structure: Flack |
| Primary atom site location: difference Fourier map | Absolute structure parameter: −0.012 (18) |
| Experimental. CrysAlisPro 1.171.41.117a (Rigaku OD, 2021) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Br1 | 0.84710 (3) | −0.04550 (4) | 0.63282 (7) | 0.02494 (16) | |
| O1 | 0.4307 (2) | 0.4948 (4) | 0.3074 (4) | 0.0278 (7) | |
| N1 | 0.5437 (2) | 0.4161 (4) | 0.4275 (4) | 0.0188 (7) | |
| N2 | 0.7885 (2) | 0.6147 (4) | 0.6339 (5) | 0.0294 (7) | |
| C2 | 0.4948 (3) | 0.5231 (5) | 0.3709 (4) | 0.0216 (10) | |
| C3 | 0.5263 (3) | 0.6562 (5) | 0.3980 (4) | 0.0238 (9) | |
| H3 | 0.4934 | 0.7271 | 0.3657 | 0.029* | |
| C4 | 0.5993 (3) | 0.6812 (4) | 0.4665 (4) | 0.0215 (8) | |
| C5 | 0.6468 (3) | 0.5678 (5) | 0.5140 (5) | 0.0222 (10) | |
| C6 | 0.6185 (3) | 0.4373 (4) | 0.4937 (4) | 0.0188 (8) | |
| C7 | 0.5051 (3) | 0.2830 (4) | 0.4247 (4) | 0.0205 (8) | |
| C8 | 0.4705 (3) | 0.2349 (5) | 0.5395 (5) | 0.0237 (9) | |
| H8 | 0.4733 | 0.2837 | 0.6205 | 0.028* | |
| C9 | 0.4295 (3) | 0.1103 (5) | 0.5393 (5) | 0.0263 (9) | |
| H9 | 0.4052 | 0.0789 | 0.6209 | 0.032* | |
| C10 | 0.4243 (3) | 0.0354 (5) | 0.4255 (5) | 0.0268 (10) | |
| H10 | 0.3970 | −0.0467 | 0.4261 | 0.032* | |
| C11 | 0.4602 (3) | 0.0848 (5) | 0.3123 (5) | 0.0290 (10) | |
| H11 | 0.4587 | 0.0354 | 0.2315 | 0.035* | |
| C12 | 0.5005 (3) | 0.2097 (5) | 0.3110 (5) | 0.0260 (9) | |
| H12 | 0.5243 | 0.2417 | 0.2293 | 0.031* | |
| C13 | 0.6315 (3) | 0.8212 (5) | 0.4893 (5) | 0.0274 (10) | |
| H13A | 0.5887 | 0.8824 | 0.4551 | 0.041* | |
| H13B | 0.6857 | 0.8338 | 0.4412 | 0.041* | |
| H13C | 0.6403 | 0.8359 | 0.5859 | 0.041* | |
| C14 | 0.7262 (3) | 0.5907 (4) | 0.5820 (5) | 0.0233 (9) | |
| C15 | 0.6711 (3) | 0.3187 (4) | 0.5311 (4) | 0.0174 (8) | |
| C16 | 0.7071 (3) | 0.2397 (4) | 0.4329 (4) | 0.0201 (8) | |
| H16 | 0.6956 | 0.2589 | 0.3409 | 0.024* | |
| C17 | 0.7600 (3) | 0.1318 (4) | 0.4629 (4) | 0.0214 (8) | |
| H17 | 0.7843 | 0.0813 | 0.3924 | 0.026* | |
| C18 | 0.7751 (3) | 0.1027 (4) | 0.5913 (4) | 0.0205 (8) | |
| C19 | 0.7397 (3) | 0.1793 (5) | 0.6909 (4) | 0.0232 (9) | |
| H19 | 0.7505 | 0.1587 | 0.7828 | 0.028* | |
| C20 | 0.6878 (3) | 0.2878 (4) | 0.6599 (4) | 0.0230 (9) | |
| H20 | 0.6647 | 0.3389 | 0.7307 | 0.028* |
| Br1 | 0.0283 (2) | 0.0232 (3) | 0.0233 (2) | 0.00633 (14) | −0.0028 (2) | 0.0055 (2) |
| O1 | 0.0269 (16) | 0.0306 (17) | 0.0260 (16) | 0.0013 (15) | −0.0068 (13) | 0.0022 (14) |
| N1 | 0.0179 (16) | 0.0204 (18) | 0.0182 (17) | 0.0037 (15) | −0.0015 (13) | 0.0042 (14) |
| N2 | 0.0286 (17) | 0.0326 (19) | 0.0270 (17) | 0.0030 (14) | −0.003 (2) | −0.009 (2) |
| C2 | 0.0214 (19) | 0.027 (3) | 0.016 (2) | 0.0027 (19) | 0.0010 (16) | 0.0020 (17) |
| C3 | 0.024 (2) | 0.024 (2) | 0.024 (2) | 0.0070 (18) | 0.0013 (16) | 0.0046 (18) |
| C4 | 0.026 (2) | 0.020 (2) | 0.0187 (19) | 0.0013 (17) | 0.0017 (16) | −0.0013 (15) |
| C5 | 0.024 (2) | 0.024 (2) | 0.019 (2) | 0.0049 (16) | −0.0004 (16) | −0.0031 (18) |
| C6 | 0.021 (2) | 0.023 (2) | 0.0128 (18) | 0.0052 (17) | 0.0003 (15) | 0.0013 (15) |
| C7 | 0.0197 (19) | 0.022 (2) | 0.019 (2) | 0.0020 (17) | −0.0003 (15) | 0.0009 (17) |
| C8 | 0.023 (2) | 0.029 (2) | 0.0188 (18) | 0.0036 (17) | 0.0015 (16) | 0.0010 (17) |
| C9 | 0.027 (2) | 0.028 (2) | 0.023 (2) | 0.0004 (18) | 0.0009 (17) | 0.0042 (18) |
| C10 | 0.026 (2) | 0.023 (2) | 0.031 (3) | 0.0001 (17) | 0.0013 (19) | −0.0009 (18) |
| C11 | 0.033 (2) | 0.028 (2) | 0.026 (2) | 0.001 (2) | 0.0016 (19) | −0.004 (2) |
| C12 | 0.027 (2) | 0.033 (3) | 0.0172 (19) | −0.0010 (19) | 0.0026 (16) | −0.0004 (18) |
| C13 | 0.031 (2) | 0.020 (2) | 0.031 (2) | 0.0041 (19) | −0.0016 (19) | 0.0007 (18) |
| C14 | 0.029 (2) | 0.021 (2) | 0.0199 (18) | 0.0020 (18) | 0.0007 (16) | −0.0028 (17) |
| C15 | 0.0170 (17) | 0.017 (2) | 0.018 (2) | 0.0035 (16) | −0.0027 (15) | −0.0001 (16) |
| C16 | 0.025 (2) | 0.022 (2) | 0.0131 (18) | 0.0017 (16) | 0.0016 (15) | 0.0015 (15) |
| C17 | 0.0219 (19) | 0.025 (2) | 0.0174 (19) | 0.0030 (16) | 0.0019 (15) | −0.0021 (16) |
| C18 | 0.0228 (19) | 0.019 (2) | 0.0196 (19) | 0.0006 (16) | −0.0029 (14) | 0.0030 (15) |
| C19 | 0.026 (2) | 0.028 (2) | 0.0150 (18) | 0.0051 (18) | −0.0014 (16) | −0.0002 (17) |
| C20 | 0.028 (2) | 0.027 (2) | 0.014 (2) | 0.0015 (17) | −0.0006 (15) | −0.0017 (15) |
| Br1—C18 | 1.944 (4) | C9—H9 | 0.9500 |
| O1—C2 | 1.217 (6) | C10—C11 | 1.354 (7) |
| N1—C6 | 1.356 (6) | C10—H10 | 0.9500 |
| N1—C2 | 1.456 (6) | C11—C12 | 1.436 (7) |
| N1—C7 | 1.503 (6) | C11—H11 | 0.9500 |
| N2—C14 | 1.127 (6) | C12—H12 | 0.9500 |
| C2—C3 | 1.485 (7) | C13—H13A | 0.9800 |
| C3—C4 | 1.352 (7) | C13—H13B | 0.9800 |
| C3—H3 | 0.9500 | C13—H13C | 0.9800 |
| C4—C5 | 1.464 (7) | C15—C20 | 1.342 (6) |
| C4—C13 | 1.548 (6) | C15—C16 | 1.389 (6) |
| C5—C14 | 1.429 (6) | C16—C17 | 1.420 (6) |
| C5—C6 | 1.433 (7) | C16—H16 | 0.9500 |
| C6—C15 | 1.520 (6) | C17—C18 | 1.329 (6) |
| C7—C8 | 1.353 (6) | C17—H17 | 0.9500 |
| C7—C12 | 1.360 (6) | C18—C19 | 1.380 (6) |
| C8—C9 | 1.437 (7) | C19—C20 | 1.417 (6) |
| C8—H8 | 0.9500 | C19—H19 | 0.9500 |
| C9—C10 | 1.371 (7) | C20—H20 | 0.9500 |
| C6—N1—C2 | 121.0 (4) | C10—C11—H11 | 119.1 |
| C6—N1—C7 | 120.1 (4) | C12—C11—H11 | 119.1 |
| C2—N1—C7 | 118.6 (3) | C7—C12—C11 | 121.1 (4) |
| O1—C2—N1 | 116.5 (4) | C7—C12—H12 | 119.5 |
| O1—C2—C3 | 126.0 (4) | C11—C12—H12 | 119.5 |
| N1—C2—C3 | 117.5 (4) | C4—C13—H13A | 109.5 |
| C4—C3—C2 | 123.2 (4) | C4—C13—H13B | 109.5 |
| C4—C3—H3 | 118.4 | H13A—C13—H13B | 109.5 |
| C2—C3—H3 | 118.4 | C4—C13—H13C | 109.5 |
| C3—C4—C5 | 115.7 (4) | H13A—C13—H13C | 109.5 |
| C3—C4—C13 | 121.7 (4) | H13B—C13—H13C | 109.5 |
| C5—C4—C13 | 122.6 (4) | N2—C14—C5 | 176.7 (5) |
| C14—C5—C6 | 119.2 (4) | C20—C15—C16 | 116.6 (4) |
| C14—C5—C4 | 117.1 (4) | C20—C15—C6 | 121.9 (4) |
| C6—C5—C4 | 123.6 (4) | C16—C15—C6 | 121.4 (4) |
| N1—C6—C5 | 118.9 (4) | C15—C16—C17 | 123.4 (4) |
| N1—C6—C15 | 116.8 (4) | C15—C16—H16 | 118.3 |
| C5—C6—C15 | 124.0 (4) | C17—C16—H16 | 118.3 |
| C8—C7—C12 | 118.1 (4) | C18—C17—C16 | 118.8 (4) |
| C8—C7—N1 | 118.7 (4) | C18—C17—H17 | 120.6 |
| C12—C7—N1 | 123.1 (4) | C16—C17—H17 | 120.6 |
| C7—C8—C9 | 120.4 (4) | C17—C18—C19 | 119.0 (4) |
| C7—C8—H8 | 119.8 | C17—C18—Br1 | 118.9 (3) |
| C9—C8—H8 | 119.8 | C19—C18—Br1 | 122.1 (3) |
| C10—C9—C8 | 122.2 (4) | C18—C19—C20 | 121.8 (4) |
| C10—C9—H9 | 118.9 | C18—C19—H19 | 119.1 |
| C8—C9—H9 | 118.9 | C20—C19—H19 | 119.1 |
| C11—C10—C9 | 116.4 (4) | C15—C20—C19 | 120.4 (4) |
| C11—C10—H10 | 121.8 | C15—C20—H20 | 119.8 |
| C9—C10—H10 | 121.8 | C19—C20—H20 | 119.8 |
| C10—C11—C12 | 121.8 (5) | ||
| C6—N1—C2—O1 | 176.5 (4) | C2—N1—C7—C12 | 75.3 (5) |
| C7—N1—C2—O1 | −10.1 (6) | C12—C7—C8—C9 | −0.5 (6) |
| C6—N1—C2—C3 | −4.8 (6) | N1—C7—C8—C9 | 177.2 (4) |
| C7—N1—C2—C3 | 168.5 (4) | C7—C8—C9—C10 | 0.5 (7) |
| O1—C2—C3—C4 | −178.3 (5) | C8—C9—C10—C11 | 0.2 (7) |
| N1—C2—C3—C4 | 3.2 (7) | C9—C10—C11—C12 | −0.9 (7) |
| C2—C3—C4—C5 | −0.2 (7) | C8—C7—C12—C11 | −0.1 (7) |
| C2—C3—C4—C13 | 178.2 (4) | N1—C7—C12—C11 | −177.8 (4) |
| C3—C4—C5—C14 | 177.5 (4) | C10—C11—C12—C7 | 0.9 (7) |
| C13—C4—C5—C14 | −0.8 (7) | N1—C6—C15—C20 | −117.6 (5) |
| C3—C4—C5—C6 | −1.4 (7) | C5—C6—C15—C20 | 68.0 (6) |
| C13—C4—C5—C6 | −179.8 (4) | N1—C6—C15—C16 | 65.0 (6) |
| C2—N1—C6—C5 | 3.4 (6) | C5—C6—C15—C16 | −109.5 (5) |
| C7—N1—C6—C5 | −169.9 (4) | C20—C15—C16—C17 | −0.8 (6) |
| C2—N1—C6—C15 | −171.3 (4) | C6—C15—C16—C17 | 176.8 (4) |
| C7—N1—C6—C15 | 15.4 (6) | C15—C16—C17—C18 | 1.3 (7) |
| C14—C5—C6—N1 | −179.1 (4) | C16—C17—C18—C19 | −0.9 (7) |
| C4—C5—C6—N1 | −0.2 (7) | C16—C17—C18—Br1 | 179.7 (3) |
| C14—C5—C6—C15 | −4.8 (7) | C17—C18—C19—C20 | 0.1 (7) |
| C4—C5—C6—C15 | 174.1 (4) | Br1—C18—C19—C20 | 179.5 (3) |
| C6—N1—C7—C8 | 71.1 (5) | C16—C15—C20—C19 | −0.1 (7) |
| C2—N1—C7—C8 | −102.3 (5) | C6—C15—C20—C19 | −177.6 (4) |
| C6—N1—C7—C12 | −111.3 (5) | C18—C19—C20—C15 | 0.4 (7) |
| H··· | ||||
| C16—H16···N2i | 0.95 | 2.55 | 3.234 (6) | 129 |
| C17—H17···O1ii | 0.95 | 2.56 | 3.342 (6) | 140 |
| C20—H20···O1iii | 0.95 | 2.40 | 3.256 (6) | 150 |