Literature DB >> 23284469

2-Amino-5-methyl-pyridinium 6-oxo-1,6-dihydro-pyridine-2-carboxyl-ate.

Kaliyaperumal Thanigaimani1, Abbas Farhadikoutenaei, Nuridayanti Che Khalib, Suhana Arshad, Ibrahim Abdul Razak.   

Abstract

The anion of the title salt, C(6)H(9)N(2) (+)·C(6)H(4)NO(3) (-), undergoes an enol-to-keto tautomerism during the crystallization. In the crystal structure, the cation and anion are held together by a relatively short N-H⋯O hydrogen bond, and the two anions are further connected to each other by a pair of N-H⋯O hydrogen bonds with an R(2) (2)(8) ring motif, thus forming a centrosymmetric 2 + 2 aggregate. The aggregates are further linked through weak N-H⋯O and C-H⋯O hydrogen bonds, resulting a three-dimensional network.

Entities:  

Year:  2012        PMID: 23284469      PMCID: PMC3515249          DOI: 10.1107/S1600536812041359

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of 2-amino­pyridine and its derivatives, see: Banerjee & Murugavel (2004 ▶); Bis & Zaworotko (2005 ▶); Bis et al. (2006 ▶). For details of 6-hy­droxy­picolinic acid, see: Sun et al. (2004 ▶); Soares-Santos et al. (2003 ▶). For a related structure, see: Sawada & Ohashi (1998 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For bond-length data, see: Allen et al. (1987 ▶). For stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C6H9N2C6H4NO3 M = 247.25 Monoclinic, a = 11.7093 (6) Å b = 10.4594 (6) Å c = 11.4590 (6) Å β = 119.203 (1)° V = 1225.03 (11) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.45 × 0.35 × 0.23 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.957, T max = 0.978 15984 measured reflections 4430 independent reflections 3745 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.116 S = 1.02 4430 reflections 180 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812041359/is5197sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812041359/is5197Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812041359/is5197Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C6H4NO3F(000) = 520
Mr = 247.25Dx = 1.341 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6176 reflections
a = 11.7093 (6) Åθ = 3.6–32.6°
b = 10.4594 (6) ŵ = 0.10 mm1
c = 11.4590 (6) ÅT = 100 K
β = 119.203 (1)°Block, colourless
V = 1225.03 (11) Å30.45 × 0.35 × 0.23 mm
Z = 4
Bruker SMART APEXII DUO CCD area-detector diffractometer4430 independent reflections
Radiation source: fine-focus sealed tube3745 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
φ and ω scansθmax = 32.6°, θmin = 3.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −17→17
Tmin = 0.957, Tmax = 0.978k = −15→15
15984 measured reflectionsl = −16→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0661P)2 + 0.2292P] where P = (Fo2 + 2Fc2)/3
4430 reflections(Δ/σ)max < 0.001
180 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.21 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.37734 (6)0.60282 (6)0.39711 (6)0.01806 (13)
O20.80810 (7)0.48126 (7)0.29773 (7)0.02633 (15)
O30.79587 (6)0.45930 (6)0.48584 (7)0.02282 (14)
N10.55569 (6)0.55843 (7)0.37336 (7)0.01512 (13)
N20.02845 (7)0.72276 (7)0.43791 (7)0.01818 (14)
N30.14291 (7)0.77377 (8)0.32695 (8)0.02345 (16)
C10.43630 (7)0.61584 (7)0.33157 (8)0.01518 (14)
C20.38707 (8)0.68852 (8)0.21019 (8)0.02096 (16)
H2A0.30640.73280.17760.025*
C30.45395 (9)0.69519 (10)0.14089 (9)0.02493 (18)
H3A0.41950.74390.06080.030*
C40.57443 (9)0.63000 (9)0.18740 (9)0.02318 (17)
H4A0.62030.63260.13820.028*
C50.62317 (8)0.56351 (8)0.30428 (8)0.01706 (15)
C60.75338 (8)0.49530 (8)0.36664 (9)0.01855 (15)
C7−0.25015 (10)0.86990 (10)0.46610 (12)0.0311 (2)
H7A−0.24900.79980.52340.047*
H7B−0.33610.87370.38560.047*
H7C−0.23280.95090.51490.047*
C8−0.14653 (8)0.84727 (8)0.42693 (9)0.02107 (16)
C9−0.12821 (9)0.93128 (9)0.34046 (10)0.02358 (17)
H9A−0.18341.00390.30550.028*
C10−0.03306 (9)0.91053 (9)0.30608 (9)0.02217 (17)
H10A−0.02190.96850.24860.027*
C110.04861 (7)0.80162 (8)0.35711 (8)0.01760 (15)
C12−0.06528 (8)0.74369 (8)0.47303 (8)0.01970 (16)
H12A−0.07460.68490.53100.024*
H1N10.5904 (14)0.5129 (15)0.4496 (14)0.033 (3)*
H2N30.1961 (15)0.7063 (15)0.3644 (15)0.037 (4)*
H1N30.1663 (14)0.8348 (15)0.2824 (14)0.034 (3)*
H1N20.0830 (15)0.6489 (15)0.4686 (16)0.040 (4)*
U11U22U33U12U13U23
O10.0171 (3)0.0218 (3)0.0192 (3)0.0032 (2)0.0119 (2)0.0018 (2)
O20.0276 (3)0.0276 (3)0.0359 (4)0.0033 (2)0.0250 (3)0.0001 (3)
O30.0197 (3)0.0248 (3)0.0278 (3)0.0060 (2)0.0146 (2)0.0074 (2)
N10.0151 (3)0.0164 (3)0.0162 (3)0.0019 (2)0.0095 (2)0.0018 (2)
N20.0169 (3)0.0183 (3)0.0205 (3)0.0015 (2)0.0101 (2)0.0027 (2)
N30.0218 (3)0.0263 (4)0.0279 (4)0.0065 (3)0.0166 (3)0.0067 (3)
C10.0146 (3)0.0155 (3)0.0166 (3)0.0011 (2)0.0084 (3)−0.0002 (2)
C20.0188 (3)0.0228 (4)0.0218 (4)0.0046 (3)0.0104 (3)0.0068 (3)
C30.0245 (4)0.0297 (4)0.0229 (4)0.0045 (3)0.0134 (3)0.0097 (3)
C40.0245 (4)0.0278 (4)0.0234 (4)0.0029 (3)0.0165 (3)0.0062 (3)
C50.0178 (3)0.0177 (3)0.0201 (3)0.0008 (2)0.0128 (3)0.0003 (3)
C60.0184 (3)0.0156 (3)0.0269 (4)0.0005 (2)0.0152 (3)0.0003 (3)
C70.0284 (4)0.0308 (5)0.0453 (6)−0.0001 (4)0.0269 (4)−0.0044 (4)
C80.0190 (3)0.0219 (4)0.0259 (4)−0.0008 (3)0.0138 (3)−0.0025 (3)
C90.0213 (4)0.0218 (4)0.0293 (4)0.0058 (3)0.0137 (3)0.0036 (3)
C100.0223 (4)0.0217 (4)0.0246 (4)0.0053 (3)0.0131 (3)0.0063 (3)
C110.0160 (3)0.0194 (3)0.0182 (3)0.0009 (2)0.0090 (3)0.0009 (3)
C120.0195 (3)0.0210 (4)0.0215 (4)−0.0020 (3)0.0122 (3)−0.0002 (3)
O1—C11.2511 (9)C3—H3A0.9500
O2—C61.2447 (9)C4—C51.3628 (12)
O3—C61.2617 (11)C4—H4A0.9500
N1—C51.3654 (9)C5—C61.5104 (11)
N1—C11.3751 (10)C7—C81.5036 (12)
N1—H1N10.899 (15)C7—H7A0.9800
N2—C111.3440 (11)C7—H7B0.9800
N2—C121.3585 (10)C7—H7C0.9800
N2—H1N20.954 (16)C8—C121.3665 (12)
N3—C111.3402 (10)C8—C91.4169 (13)
N3—H2N30.900 (16)C9—C101.3681 (12)
N3—H1N30.938 (15)C9—H9A0.9500
C1—C21.4361 (11)C10—C111.4172 (11)
C2—C31.3622 (12)C10—H10A0.9500
C2—H2A0.9500C12—H12A0.9500
C3—C41.4161 (12)
C5—N1—C1123.96 (7)O2—C6—O3126.76 (8)
C5—N1—H1N1118.0 (9)O2—C6—C5117.96 (8)
C1—N1—H1N1118.0 (9)O3—C6—C5115.27 (7)
C11—N2—C12122.96 (7)C8—C7—H7A109.5
C11—N2—H1N2116.1 (9)C8—C7—H7B109.5
C12—N2—H1N2121.0 (9)H7A—C7—H7B109.5
C11—N3—H2N3120.9 (9)C8—C7—H7C109.5
C11—N3—H1N3119.2 (9)H7A—C7—H7C109.5
H2N3—N3—H1N3118.4 (13)H7B—C7—H7C109.5
O1—C1—N1120.55 (7)C12—C8—C9116.59 (8)
O1—C1—C2124.11 (7)C12—C8—C7121.36 (8)
N1—C1—C2115.33 (7)C9—C8—C7122.05 (8)
C3—C2—C1121.23 (7)C10—C9—C8121.70 (8)
C3—C2—H2A119.4C10—C9—H9A119.2
C1—C2—H2A119.4C8—C9—H9A119.2
C2—C3—C4120.43 (8)C9—C10—C11119.28 (8)
C2—C3—H3A119.8C9—C10—H10A120.4
C4—C3—H3A119.8C11—C10—H10A120.4
C5—C4—C3118.57 (7)N3—C11—N2119.21 (8)
C5—C4—H4A120.7N3—C11—C10122.91 (8)
C3—C4—H4A120.7N2—C11—C10117.88 (7)
C4—C5—N1120.42 (7)N2—C12—C8121.60 (8)
C4—C5—C6123.23 (7)N2—C12—H12A119.2
N1—C5—C6116.33 (7)C8—C12—H12A119.2
C5—N1—C1—O1176.99 (7)C4—C5—C6—O3167.03 (9)
C5—N1—C1—C2−2.64 (11)N1—C5—C6—O3−11.36 (11)
O1—C1—C2—C3−177.60 (9)C12—C8—C9—C10−0.71 (14)
N1—C1—C2—C32.02 (12)C7—C8—C9—C10179.51 (9)
C1—C2—C3—C40.03 (15)C8—C9—C10—C110.60 (14)
C2—C3—C4—C5−1.64 (15)C12—N2—C11—N3−179.75 (8)
C3—C4—C5—N11.11 (14)C12—N2—C11—C10−0.56 (12)
C3—C4—C5—C6−177.22 (8)C9—C10—C11—N3179.19 (9)
C1—N1—C5—C41.13 (13)C9—C10—C11—N20.03 (13)
C1—N1—C5—C6179.56 (7)C11—N2—C12—C80.45 (13)
C4—C5—C6—O2−12.31 (13)C9—C8—C12—N20.19 (13)
N1—C5—C6—O2169.31 (8)C7—C8—C12—N2179.97 (8)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O1i0.899 (15)2.011 (15)2.8922 (10)166.0 (16)
N3—H2N3···O10.900 (16)2.245 (19)3.0373 (12)146.7 (15)
N3—H2N3···O3i0.900 (16)2.408 (16)3.0916 (11)133.0 (15)
N3—H1N3···O2ii0.938 (15)1.884 (16)2.8071 (12)167.7 (15)
N2—H1N2···O3i0.954 (16)1.686 (18)2.6206 (11)165.7 (17)
C3—H3A···O1iii0.952.333.2598 (11)166
C9—H9A···O1iv0.952.543.3750 (12)146
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N1⋯O1i 0.899 (15)2.011 (15)2.8922 (10)166.0 (16)
N3—H2N3⋯O10.900 (16)2.245 (19)3.0373 (12)146.7 (15)
N3—H2N3⋯O3i 0.900 (16)2.408 (16)3.0916 (11)133.0 (15)
N3—H1N3⋯O2ii 0.938 (15)1.884 (16)2.8071 (12)167.7 (15)
N2—H1N2⋯O3i 0.954 (16)1.686 (18)2.6206 (11)165.7 (17)
C3—H3A⋯O1iii 0.952.333.2598 (11)166
C9—H9A⋯O1iv 0.952.543.3750 (12)146

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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