Marija Dubackic1, Yun Liu2,3, Elizabeth G Kelley2, Crispin Hetherington4, Michael Haertlein5, Juliette M Devos5, Sara Linse6, Emma Sparr1, Ulf Olsson1. 1. Physical Chemistry, Department of Chemistry, Lund University, SE-22100 Lund, Sweden. 2. Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, Maryland 20878, United States. 3. Chemical and Biomolecular Engineering Department, University of Delaware, Newark, Delaware 19716, United States. 4. National Center for High Resolution Electron Microscopy, Centre for Analysis and Synthesis, Chemistry Centre, Lund University, SE-22100 Lund, Sweden. 5. Life Sciences Group, Institut Laue-Langevin, 38000 Grenoble, France. 6. Biochemistry and Structural Biology, Department of Chemistry, Lund University, SE-22100 Lund, Sweden.
Abstract
α-Synuclein (aSyn) is a 140 residue long protein present in presynaptic termini of nerve cells. The protein is associated with Parkinson's disease, in which case it has been found to self-assemble into long amyloid fibrils forming intracellular inclusions that are also rich in lipids. Furthermore, its synaptic function is proposed to involve interaction with lipid membranes, and hence, it is of interest to understand aSyn-lipid membrane interactions in detail. In this paper we report on the interaction of aSyn with model membranes in the form of lipid bilayer discs. Using a combination of cryogenic transmission electron microscopy and small-angle neutron scattering, we show that circular discs undergo a significant shape transition after the adsorption of aSyn. When aSyn self-assembles into fibrils, aSyn molecules desorb from the bilayer discs, allowing them to recover to their original shape. Interestingly, the desorption process has an all-or-none character, resulting in a binary coexistence of circular bilayer discs with no adsorbed aSyn and deformed bilayer discs having a maximum amount of adsorbed protein. The observed coexistence is consistent with the recent finding of cooperative aSyn adsorption to anionic lipid bilayers.
α-Synuclein (aSyn) is a 140 residue long protein present in presynaptic termini of nerve cells. The protein is associated with Parkinson's disease, in which case it has been found to self-assemble into long amyloid fibrils forming intracellular inclusions that are also rich in lipids. Furthermore, its synaptic function is proposed to involve interaction with lipid membranes, and hence, it is of interest to understand aSyn-lipid membrane interactions in detail. In this paper we report on the interaction of aSyn with model membranes in the form of lipid bilayer discs. Using a combination of cryogenic transmission electron microscopy and small-angle neutron scattering, we show that circular discs undergo a significant shape transition after the adsorption of aSyn. When aSyn self-assembles into fibrils, aSyn molecules desorb from the bilayer discs, allowing them to recover to their original shape. Interestingly, the desorption process has an all-or-none character, resulting in a binary coexistence of circular bilayer discs with no adsorbed aSyn and deformed bilayer discs having a maximum amount of adsorbed protein. The observed coexistence is consistent with the recent finding of cooperative aSyn adsorption to anionic lipid bilayers.
α-Synuclein (aSyn) is a 140 residue
natively disordered protein
found in presynaptic terminals of neurons. The exact function of aSyn in vivo remains mostly unknown. It has been suggested that
aSyn plays a role in lipid metabolism,[1−3] influences phospholipid
composition,[4] and organizes membrane components.[5] It has further been suggested that aSyn plays
a role in neurotransmitter release by promoting membrane remodeling
during synaptic transmission.[6] All of these
suggested roles would imply that aSyn–lipid interactions are
important for the biological function of the protein.Under
certain conditions, aSyn self-assembles into β-sheet-rich
amyloid fibrils, which represent a hallmark of Parkinson’s
disease, the second most common neurodegenerative disease.[7−10] Such fibrils are a main component of intracellular inclusions called
Lewy bodies (LBs),[7,8] which also contain significant
amounts of lipids.[11,12] The observed colocalization of
aSyn fibrils and lipids in LBs has stimulated numerous studies of
aSyn–lipid interactions.[1,13−24]It has been shown that the monomeric protein adsorbs to membranes
that contain anionic lipids, where it undergoes a secondary structural
transformation to an α-helical conformation.[13−16,25] The ability to adsorb onto lipid membranes may play an important
role in the biological function of aSyn.[26] It was recently inferred that the adsorption of aSyn onto phospholipid
membranes occurs with strong positive cooperativity.[17] Furthermore, it has been found that aSyn may induce vesicle
disruption and leakage,[18,19] as well as vesicle
remodelling,[1,20] i.e., conversion of initially
spherical vesicles into micelles of altered morphologies such as cylinders
or into bilayer tubes or deformed prolate-shaped vesicles.[17] The presence of anionic lipid vesicles has been
found to accelerate aSyn fibril formation,[21−24] where it is believed that vesicles
with adsorbed aSyn act as a surface for nucleation of fibril formation.[23]In order to gain more insight into the
interactions of aSyn and
lipid membranes, we have investigated in the present work a mixture
of aSyn and lipid bilayer discs. The discs are composed of a combination
of zwitterionic phosphatidylcholine and anionic phosphatidylserine
lipids, both with dimyristoyl chains. Here, aSyn adsorption onto
lipid bilayer discs was investigated through an adsorption-induced
shape deformation of lipid bilayer discs, monitored by cryogenic transmission
electron microscopy (cryo-TEM) and contrast-matching small-angle neutron
scattering (SANS). The latter experiments were performed with deuterated
aSyn and heavy water (D2O) buffer, so that the protein
was effectively contrast-matched to the solvent, and only the scattering
from lipid bilayer discs was visible in the SANS pattern.
Experimental Section
α-Synuclein
Protonated aSyn was expressed in-house
in BL21 DE3 PLysS Star Escherichia coli from a synthetic
gene with E. coli-optimized codons (purchased from
Genscript, Piscataway, New Jersey). An E. coli cell
pellet containing deuterated aSyn was prepared in the Deuteration
Laboratory of the Institut Laue-Langevin (ILL) in Grenoble, France,
as previously described.[14] A high-cell-density
fed-batch culture using 85% deuterated Enfors minimal medium was grown
with computer-controlled temperature at 30 °C and pO at 30% saturation.[27] The protonated and deuterated proteins were separately purified
using heat treatment, ion exchange, and gel filtration chromatography,
as described previously.[28] The degree of
deuteration was 75%, as determined using mass spectrometry of the
purified deuterated protein.aSyn monomers were isolated using
size exclusion chromatography (SEC) in 10 mM MES [2-(N-morpholino)ethanesulfonate] buffer (where M = mol/L denotes molar
concentration) at pH 5.5 using a 24 mL Superdex75 column (GE Healthcare).
The protein concentration was measured using the integrated absorbance
at 280 nm of the collected fraction based on the SEC chromatogram
and the molar extinction coefficient 5800 M–1 cm–1.
Lipid Bilayer Disc Preparation
The lipid bilayer discs
were composed of 1,2-dimyristoyl-sn-glycero-3-phosphocholine
(DMPC) and 1,2-dimyristoyl-sn-glycero-3-phospho-l-serine (DMPS), with a molar ratio PC/PS = 7/3. Lipid powders
were purchased from Avanti Polar lipids. After weighing each lipid
component, the powders were dissolved in a chloroform/methanol mixture
(3/1 volume ratio). The solvent was evaporated underneath a stream
of N2 gas, and the formed lipid film was left in a vacuum
oven overnight to be sure that any possible trace of solvent evaporated.
The dry lipid film was dispersed in 10 mM MES buffer at pH 5.5. Prior
to extrusion, 5 freeze–thaw cycles were performed, where freezing
was performed at −20 °C and thawing at 50 °C in the
MES buffer at pH 5.5. The thawing was carried out above the expected
phase transition temperature for the DMPC/DMPS mixture, which occurs
at around 25 °C.[29,30] The extrusion was performed 21
times through polycarbonate membranes with 50 nm pore size filters
using an Avanti miniextruder (Avanti Polar lipids).
Seeds
We used preformed protonated fibrils at 1 mol
% monomer equivalent concentration in order to accelerate protein
aggregation. The seeds were formed prior to the experiment by incubating
0.28 mM aSyn monomers in 10 mM MES buffer pH 5.5 under constant stirring.
In order to get a dispersion of small seeds, the seed solution was
sonicated for 1 min in a bath sonicator prior to mixing with monomers.
Sample Preparation for Protein–Lipid Mixtures
Salts from the buffer used during SEC were separated from the protein
using a 5 mL HiTrap desalting column (GE Healthcare). The collected
fractions were lyophilized in order to obtain the high protein concentration
required for the scattering experiment. To ensure that the aSyn was
initially in its monomeric form, we resuspended lyophilized protein
powder in 1 mM NaOH at pH 11.4 (Figure S1). After ca. 30 min, the same volume of 20 mM MES buffer at pH 5.3
was added. Mixing the same volumes of 1 mM NaOH (pH 11.4) and 20 mM
MES buffer (pH 5.3) results in 10 mM MES at pH 5.5. Finally, we added
a dispersion containing lipid bilayer discs and the sonicated seed
solution in 10 mM MES buffer. The final protein concentration was
0.40 mM, and the lipid concentration was 2.1 mM. The samples were
incubated at 37 °C, which is above the expected phase transition
temperature of the lipids.[29]
Small-Angle Neutron Scattering
The experiment was performed
with the vSANS instrument at NIST Center for Neutron Research (NCNR).[31] The velocity selector was used to select 6 Å
neutrons with a 12% wavelength spread. Two detector banks were used
at distances 5 m and 20 m to cover the q range from
0.0015 Å–1 and 0.13 Å–1, where is the magnitude of the scattering vector,
θ being the scattering angle and λ the neutron wavelength.
The samples in quartz cells with 1 mm thickness, were mounted on a
stage with four sample slots. During the experiment, the samples were
slowly rotated to avoid the precipitation of aggregates. The sample
stage temperature was controlled to 37 °C and was monitored by
measuring the temperature of water in a quartz cell that was mounted
to the sample stage. The data collected were reduced to absolute intensity
by correcting for the scattering from the background and empty cell
following the standard data reduction procedures at the NCNR using
the provided IGOR software packages.[32]
Cryogenic Transmission Electron Microscopy
The morphology
of the lipid bilayer discs was examined using a JEM-2200FS transmission
electron microscope (JEOL) specially optimized for cryo-TEM at the
National Center for High Resolution Electron Microscopy (nCHREM) at
Lund University. It is equipped with a Schottky field-emission electron
source and operated at an acceleration voltage of 200 kV. An in-column
energy (omega) filter and a 25 eV slit were used. The images were
recorded via SerialEM software under low-dose conditions onto a bottom-mounted
TemCam-F416 camera (TVIPS).Each sample was prepared using an
automatic plunge-freezer system (Leica EM GP) with the environmental
chamber operated at 20 °C and 90% relative humidity. A droplet
(4 μL) taken from a sample that had been incubated at 37 °C
was deposited on a lacey Formvar carbon-coated grid (Ted Pella) and
was blotted with filter paper to remove excess fluid. The grid was
then plunged into liquid ethane (around −184 °C) to ensure
the rapid vitrification of the sample in its native state. Prior to
the cryo-TEM measurements, the specimens were stored in liquid nitrogen
(−196 °C) before imaging under the microscope using a
cryotransfer tomography holder (Fischione Model 2550).
Kinetics of Fibril Formation
The kinetics of fibril
formation were studied at 37 °C using the fluorescent dye thioflavin
T (ThT) as a reporter of fibril formation. Protonated aSyn in 10 mM
MES pH 5.5 prepared in H2O was incubated in a PEG-ylated
96-well plate (Corning 3881) under quiescent conditions in a plate
reader (Fluostar Omega). The ThT fluorescence was measured through
the bottom of the plate every 60 s with a 448 nm excitation filter
and 480 nm emission filter. The initial monomer concentration was
0.40 mM, the seed concentration 4 μM, the ThT concentration
20 μM, and the lipid concentration 2.1 mM.
Results and Discussion
In this study, we have investigated
how lipid bilayer discs respond
to the adsorption of aSyn monomers and/or aSyn fibril formation occurring
in their presence. Lipid bilayer discs are heterogeneous with respect
to their curvature. They are composed of two distinct regions, the
flat part and the rim where the lipid monolayer needs to curve to
avoid a significant hydrocarbon–water contact. Because of the
structural constraints at these two very different sites, lipid bilayer
discs are often required to contain a mixture of two lipid components
to be stable. One (typically the major) lipid component has a preference
for the flat regions, and the other lipid component has a preference
for curved regions.[33] The lipids preferring
a flat bilayer are generally zwitterionic phospholipids with two long
acyl chains, while the lipids preferring the curved rims tend to be,
for example, short-chain lipids,[34−36] ganglioside GM1 lipids,[37] or PEGylated lipids.[38,39] In the present study, we have used a lipid mixture composed of DMPC
and DMPS, at the molar ratio DMPC/DMPS = 7/3. Here, the charged lipid,
DMPS, is believed to have a preference for the curved rim because
of the contribution from electrostatic interactions to the monolayer
spontaneous curvature.[33] The intrinsic
pKa of the carboxylate group of PS is
approximately 3.6.[40] However, because of
the negative surface potential, the apparent pKa (defined as the bulk pH when half of the carboxyl groups
are dissociated) is higher. Due to the inhomogeneous distribution
of DMPS, it is difficult to estimate the exact degree of protonation,
but it is possible that a significant fraction of the carboxyl groups
are protonated at the present solvent conditions.In Figure a, we
present a cryo-TEM image of a pure lipid bilayer disc sample having
a lipid concentration cL = 7.5 mM in 10
mM MES buffer at pH 5.5. The presence of disclike structures, rather
than vesicles, is confirmed by the absence of sharp contrast at rims,
as expected for hollow vesicles.[41−43] In Figure b, we show the same image but
with the lipid bilayer discs highlighted with an orange color. The
lipid bilayer discs are close to circular in shape, as is expected
due to a finite line tension of the rim, which favors a circular shape.
However, several discs deviate from a circular shape in the 2D image
projection, which we interpret as different disc orientations. When
the disc normal is not perpendicular to the plane of view, circular
discs appear elliptic, and as a line when the normal is in the plane
(Figure S2). Assuming circular discs, one
may still evaluate the disc diameter from the longest axis of the
elliptical shape. We have made a coarse analysis of the disc size
distribution observed by cryo-TEM (Figure a). The resulting histogram, compared to
a log-normal distribution curve, is shown in Figure c, yielding an average size of ⟨R⟩ = 50 nm.
Figure 1
(a) Cryo-TEM image of a lipid bilayer disc suspension
at a lipid
concentration of 7.5 mM. (b) The same image as shown in panel (a)
with discs highlighted with orange color for better visualization.
(c) Size distribution of the lipid bilayer disc radius obtained from
cryo-TEM images compared with a log-normal distribution (red line).
The diameter of the tilted discs was set to be the longest axis. (d)
Scattering profile of a 2.1 mM disc dispersion (black squares) and
the disc model that provides the best agreement with the data (red
line). The inset shows a schematic illustration of a lipid bilayer
disc, where the red color indicates the lipid chain region, and the
blue filled circles represent the lipid headgroups.
(a) Cryo-TEM image of a lipid bilayer disc suspension
at a lipid
concentration of 7.5 mM. (b) The same image as shown in panel (a)
with discs highlighted with orange color for better visualization.
(c) Size distribution of the lipid bilayer disc radius obtained from
cryo-TEM images compared with a log-normal distribution (red line).
The diameter of the tilted discs was set to be the longest axis. (d)
Scattering profile of a 2.1 mM disc dispersion (black squares) and
the disc model that provides the best agreement with the data (red
line). The inset shows a schematic illustration of a lipid bilayer
disc, where the red color indicates the lipid chain region, and the
blue filled circles represent the lipid headgroups.The relative stability of vesicles and discs has
been analyzed
previously.[44−47] In short, discs are stable for smaller areas while vesicles are
the stable structure for larger areas. The transition occurs at a
disc radius approximately given by R ≈ 8κ/γ,
where κ is the bending rigidity, and γ is the line tension.[47] Thus, discs are favored over vesicles in the
case of a high bending rigidity and a low line tension.In Figure d, we
present a SANS pattern from the lipid bilayer discs at cL = 2.1 mM. Neglecting interactions between discs, which
is a reasonable approximation due to the low lipid concentration and
the 10 mM buffer acting as a screening electrolyte, the scattering
profile, I(q), can be written asHere, is the number density of discs, Vd the disc volume, Δρ the scattering
length density difference between discs and the solvent, and Pd(q) the particle form factor.
The brackets ⟨...⟩ denote ensemble averages over polydisperse
discs. For a circular disc of radius R and thickness t, the orientationally averaged form factor is given by[48]The model fitting was done using SasView (https://www.sasview.org/) software,
with a fixed disc (bilayer) thickness t = 3.7 nm
and Δρ = 6 × 10–6 Å –2. The best fit is shown in Figure d as a solid red line and corresponds to R = 51 nm ± 15 nm where 15 nm is the standard deviation assuming
a log-normal distribution in R. Regarding the size
distribution of the lipid bilayer discs, a good agreement between
cryo-TEM and SANS results was found.As mentioned above, we
expect the charged lipid, DMPS, to have
a preference for the curved rim of a disc. In order to calculate the
relative area of the curved rim, we modeled the lipid bilayer discs
as flat circular discs of radius R and thickness t, with the rim further coated with a curved lipid film,
as illustrated in the inset in Figure d. The interfacial area of the flat part is Af = 2πR2,
while the area of the curved rim can be approximated by Ac = π2Rt. The area fraction
of the curved rim is then Ac/A = πt/(πt + 2R), where A = Ac + Af. The present lipid bilayer discs
have an average radius R ≈ 50 nm and t ≈ 4 nm, giving Ac/A ≈ 0.1. This value is smaller than the DMPS molar
fraction [DMPS]/([DMPS] + [DMPC]) = 0.3, implying that there is an
excess of charged lipids with respect to the curved rim area that
can act as a reservoir giving a sufficiently low line tension to stabilize
the lipid bilayer discs. Note that while we expect DMPS to accumulate
at the charged rim, we do not expect the rim to be completely DMPC
free. The equilibrium concentration of DMPS in the rim is dependent
on the balance between the electrostatic free energy, the entropy
of mixing, and the local DMPC–DMPS lateral interactions. In
any case, having an excess of DMPS compared to what is needed to stabilize
the rim implies that the corresponding line tension may be sufficiently
small to also allow for deformation of discs.We note also that
the SANS pattern and cryo-TEM images are consistent
with flat discs, and this is expected because of the high bending
rigidity of phospholipid bilayers, κ = 10kBT–20kBT.[49] De Gennes derived
that the persistence length of a semiflexible surface is given by[50]where a is the molecular
size, of the order of 1 nm. With κ = 10kBT–20kBT, we obtain λp ≫ R.
Lipid Bilayer Discs and α-Synuclein
Having characterized
the lipid bilayer discs in the absence of protein, we now proceed
to characterize the discs in the presence of aSyn. We used deuterated
aSyn and D2O buffer, in which case the protein is essentially
contrast-matched to the buffer, and the SANS pattern reports only
on the lipid bilayer discs. The experiments were performed at the
lipid-to-protein ratio L/P = 5 in 10 mM MES D2O buffer
(pH 5.5) and at 37 °C. At this mildly acidic pH, which can be
found in certain cellular compartments such as endosomes,[51,52] new fibrils rapidly form by a secondary nucleation mechanism in
the presence of already formed fibrils.[53] For this reason, we added aSyn fibril seeds at a concentration of
4 μM (1 mol % of the total protein concentration) in order to
ensure rapid aSyn aggregation.In Figure a, we show the recorded SANS pattern (ca.
15 min after protein addition) together with a SANS pattern recorded
in the absence of aSyn. As can be seen, there is a significant difference
in the patterns at lower q-values between the two
samples, which is a consequence of a change in the particle form factor.
In this low-q regime, q < 0.02
Å –1, the intensity has significantly decreased
in the sample with aSyn. For the pure lipid bilayer discs, an I(q) ∼ q–2 dependence of scattered intensity, a signature of scattering from
2D objects, was observed. However, when the lipid bilayer discs are
mixed with aSyn, that dependence changes to I(q) ∼ q–1, indicating
that the originally circular lipid bilayer discs have become highly
elongated.
Figure 2
(a) Scattering profiles of a pure disc dispersion (filled black
squares), of discs during the first 15 min after addition of aSyn
(open red squares), and the parallelepiped model (solid red line).
The best model was obtained with a length of shorter edge a = 13 nm and a length of longer edge b = 550 nm. The inset shows an illustration of the parallelepiped,
where the red color illustrates the lipid chain region, and the blue
represents the lipid head groups. (b) Cryo-TEM image taken 13 min
after mixing lipid bilayer discs and aSyn. Arrows labeled with number
1 indicate elongated structures, and arrows labeled with number 2
indicate elongated structures whose normal is not perpendicular to
the plane of view. (c) The same image as shown in panel b with deformed
lipid bilayer discs highlighted in orange for better visualization.
Scale bars in panels b and c correspond to 200 nm. The protein and
lipid concentrations in all of the samples were 0.40 and 2.1 mM, respectively.
(a) Scattering profiles of a pure disc dispersion (filled black
squares), of discs during the first 15 min after addition of aSyn
(open red squares), and the parallelepiped model (solid red line).
The best model was obtained with a length of shorter edge a = 13 nm and a length of longer edge b = 550 nm. The inset shows an illustration of the parallelepiped,
where the red color illustrates the lipid chain region, and the blue
represents the lipid head groups. (b) Cryo-TEM image taken 13 min
after mixing lipid bilayer discs and aSyn. Arrows labeled with number
1 indicate elongated structures, and arrows labeled with number 2
indicate elongated structures whose normal is not perpendicular to
the plane of view. (c) The same image as shown in panel b with deformed
lipid bilayer discs highlighted in orange for better visualization.
Scale bars in panels b and c correspond to 200 nm. The protein and
lipid concentrations in all of the samples were 0.40 and 2.1 mM, respectively.We have modeled the deformed discs as simple parallelepipeds,
and
the model that best agrees with data is shown as a solid red line
in Figure a. The orientationally
averaged form factor of a parallelepiped, Pp(q), is given by[48]The integration is performed in order
to account for all possible
orientations.[54] Here, α is an angle
between the parallelepiped’s longest axis and z-axis of the coordinate system whose origin is located at the parallelepiped’s
center, and β is an angle between the scattering vector and the y-axis of the
same coordinate system.The model fitting was done using SasView
(https://www.sasview.org/) software,
with a fixed (bilayer) thickness t = 3.7 nm and Δρ
= 6 × 10–6 Å –2. We
denote the other two parallelepiped sides by a and b. A good agreement between the model and the data is obtained
with a = 13 nm and b = 550 nm. A
parallelepiped lipid bilayer disc is illustrated in the inset of Figure a.The elongated
disc shape was confirmed using cryo-TEM. A representative
image is shown in Figure b. The sample was vitrified ca. 13 min after mixing the lipid
and protein. Highly elongated lipid bilayer discs, with the length b being several 100 nm, can be seen, although again with
low contrast. To guide the eye, we have highlighted the objects by
giving them an orange color in Figure c.It is well established that aSyn molecules
adsorb onto negatively
charged lipid membranes, and we attribute the observed disc shape
deformation to the adsorption of aSyn. From the observed dimensions
of the deformed lipid bilayer discs in the cryo-TEM image, it appears
that the deformation of lipid bilayer discs occurs at constant overall
disc size (lipid aggregation number), meaning that the total interfacial
area, A = Af + Ac, remains essentially unchanged. The observed
deformation then implies that the area of the curved rim Ac = π(a + b)t has increased at the expense of the flat part Af = 2ab. With the a and b values obtained from the SANS data, we find Ac/A ≈ 0.3, which is
an increase by a factor of 3 compared to the original circular disc.
This suggests that the aSyn molecules have a preference for adsorbing
at the curved rim, compared to the flat part, presumably because of
a higher charge density at the rim. We note that while there is a
preference of aSyn to adsorb at the highly charged rim, we still expect
also some adsorption to the flat bilayer part. In a simple picture
of the thermodynamics, the shape deformation and elongation of the
rim are expected to involve a free energy penalty in the form of an
increase in the line energy, ΔGl = γΔl > 0, where Δl is the increase of the length, l, of
the disc rim.
However, this is then compensated for by a spontaneous adsorption
of aSyn molecules, with ΔGa <
0. The equilibrium deformation is then characterized by ΔGl + ΔGa =
0.Here, the lipid-to-protein ratio, L/P = 5, is relatively
low, and
we expect to have a significant fraction of free, nonadsorbed aSyn
molecules.[17] The excess of the free protein
allows for the fibril formation to take place, as discussed in Galvagnion
et al.[23]In order to follow how the
lipid bilayer discs changed over the
course of the aSyn aggregation process, we performed a 22 h long time-resolved
contrast-matching SANS experiment. Prior to the SANS experiment, we
conducted a ThT assay at the same conditions as used in the SANS experiment
(pH 5.5 and 37 °C, cL = 2.1 mM and cP = 0.4 mM), in order to gain more insight in
the kinetics of aSyn fibril formation. Figure a shows the time dependence of the recorded
fluorescence intensity, which acts as an indicator of fibril formation.
As can be seen, there is a short lag time of ca. 15 min after which
the fluorescence intensity rapidly increases with time.
Figure 3
(a) ThT fluorescence
intensity versus time. (b) Time-resolved SANS
profiles, I(q) vs q, plotted for a total time period of ca. 22 h. with a time resolution
of 1 h. The inset shows a plot of the intensity obtained at q = 0.002 Å –1 as an additional illustration
of the time evolution of the scattered intensity. (c) Scattering profiles
obtained at different time points (open squares) were modeled as a
superposition (solid lines) of the scattering profile obtained during
the first 15 min after mixing and the pure disc dispersion. The data
are shifted for easier comparison. (d) Fraction of undeformed circular
lipid bilayer discs versus time. The protein and lipid concentrations
in all of the samples were 0.40 mM and 2.1 mM, respectively.
(a) ThT fluorescence
intensity versus time. (b) Time-resolved SANS
profiles, I(q) vs q, plotted for a total time period of ca. 22 h. with a time resolution
of 1 h. The inset shows a plot of the intensity obtained at q = 0.002 Å –1 as an additional illustration
of the time evolution of the scattered intensity. (c) Scattering profiles
obtained at different time points (open squares) were modeled as a
superposition (solid lines) of the scattering profile obtained during
the first 15 min after mixing and the pure disc dispersion. The data
are shifted for easier comparison. (d) Fraction of undeformed circular
lipid bilayer discs versus time. The protein and lipid concentrations
in all of the samples were 0.40 mM and 2.1 mM, respectively.In Figure b, we
present time-resolved SANS patterns, recorded over a time period of
22 h with a time resolution of 1 h, and compare them to the scattering
profile of a pure disc dispersion. The large difference between scattering
patterns of protein-free and aSyn-containing samples, observed at
early time points, gradually decreases with time as the scattering
pattern of protein–lipid samples approaches the pattern of
the original circular discs, reaching a steady state after ca. 8 h.
The recovery to the initial, circular shape is most likely associated
with desorption of aSyn molecules from the surface of the lipid bilayer
discs. As an inset of Figure b, we are showing the scattering intensity recorded at q = 0.002 Å –1. An apparent lag time
of ca. 1 h is observed, after which the intensity increases with time
and reaches a steady state value after ca. 8 h.Interestingly,
the scattering patterns at intermediate time points
are well described by a linear combination of the scattering profile
obtained from the pure disc dispersion, Id(q), and the scattering profile obtained in the
first 15 min after mixing discs and protein, I15min. The linear combination is calculated as I(q) = fId + (1 – f)I15min, where f is then the fraction of circular lipid bilayer discs, and 1 – f is the fraction of elongated discs. The fact that the
scattering patterns obtained at later time points are successfully
fitted with the linear combination of circular and elongated lipid
bilayer discs implies that there is coexistence of the recovered and
elongated discs, which suggests that aSyn desorption is a cooperative
process.In Figure c, we
show some selected scattering patterns together with the linear combination
fits, and in Figure d, we have plotted the obtained f-values as a function
of time. As can be seen in Figure d, f reaches a steady state value
of 0.7 after ca. 8 h. Thus, 70% of the lipid bilayer discs had recovered
their original circular shape, while the other 30% remained as highly
elongated as they were at the early time points.In Figure , we
show cryo-TEM data from samples containing protein and lipid bilayer
discs at different time points, 3, 7, and 21 h, after mixing. In images
taken at all of these time points, we see structures consistent with
the recovery from elongated objects, partially recovered structures,
as well as the presence of elongated structures, in agreement with
the cooperative desorption mechanism as inferred from the SANS data.
We note that the partially recovered structures present in these figures
are not stable but rather that the sample snapshot was taken while
not all of the monomers were desorbed from the partially recovered
disc.
Figure 4
Cryo-TEM images taken (a) 3 h after mixing, (b) 7 h after mixing,
and (c) 21 h after mixing. Arrows labeled with the number 1 indicate
elongated structures, arrows labelled with the number 2 elongated
structures whose normal is not perpendicular to the plane of view,
arrows labeled with the number 3 partially recovered structures, arrows
labeled with the number 4 structures recovered to the circular shape,
and arrows labeled with the number 5 aSyn fibrils. More cryo-TEM images
are shown in the SI (Figure S3).
Cryo-TEM images taken (a) 3 h after mixing, (b) 7 h after mixing,
and (c) 21 h after mixing. Arrows labeled with the number 1 indicate
elongated structures, arrows labelled with the number 2 elongated
structures whose normal is not perpendicular to the plane of view,
arrows labeled with the number 3 partially recovered structures, arrows
labeled with the number 4 structures recovered to the circular shape,
and arrows labeled with the number 5 aSyn fibrils. More cryo-TEM images
are shown in the SI (Figure S3).Due to fibril formation, there is a desorption
of aSyn molecules
from the surface of lipid bilayer discs. However, when investigated
in separate containers on separate instruments, there is a slight
discrepancy in the recorded time-dependencies of desorption and fibril
formation. This is not unexpected as the aggregation kinetic depends
on various factors including pH,[53] temperature,[55] the presence of an air–water interface,[56] the nature of the surface of the sample container,[57] in this case PEGylated polystyrene plate (ThT
assay) versus quartz cells (SANS experiments), and the mode of container
handling during the measurement.The proposed process of monomer
desorption can be discussed in
terms of the adsorption isotherm illustrated in Figure . At t = 0, all discs (in
blue) are covered with aSyn monomers (in red), and they are elongated.
The fibril formation, which occurs at later time points, is followed
by desorption of monomers from the lipid bilayer discs and their incorporation
into aSyn fibrils (in red). As there is nonzero monomer concentration
in equilibrium with fibrils, there are still monomers adsorbed onto
the disc surface, resulting in f < 1.
Figure 5
Illustration
of adsorbed amount, Γ, versus monomer concentration.
The recovery parameter reaches its equilibrium value feq = 0.7 at the monomer concentration which corresponds
to the solubility value.
Illustration
of adsorbed amount, Γ, versus monomer concentration.
The recovery parameter reaches its equilibrium value feq = 0.7 at the monomer concentration which corresponds
to the solubility value.The fact that the SANS patterns at different time
points are well
described by a linear combination of fully deformed lipid bilayer
discs and unperturbed circular lipid bilayer discs is striking. This
implies that, at a given time point, two populations of discs coexist:
one population of discs that are deformed and presumably saturated
with the maximum possible adsorbed amount of aSyn, and a second population
of undeformed circular lipid bilayer discs, presumably having no aSyn
molecules adsorbed. With time, only the relative fraction of each
population is changing. A similar scenario was described in a recent
paper,[17] where Makasewicz et al. systematically
studied the adsorption of aSyn onto mixed zwitterionic–anionic
lipid vesicles and found it to bind in an all-or-none fashion. Completely
covered vesicles were found to coexist with vesicles that did not
have any bound aSyn. The main conclusion of that paper was that the
adsorption process is cooperative. Interestingly, in the present experiment
where aSyn gradually desorbs, essentially the same all-or-none binding
to the lipid bilayer discs is observed. The coexistence of discs with
saturated adsorption and discs with no adsorption implies that discs
with intermediate adsorption are unstable with respect to the limiting
states. The molecular mechanism behind this very strong cooperativity
remains to be found.Finally, we note that the deformation of
lipid bilayer discs and
recovery to their original shape appear to occur at a constant number
of discs, with a constant aggregation number distribution. We base
this on the fact that the forward scattering, I(0),
at steady state appears to be very similar to I(0)
obtained from undeformed circular lipid bilayer discs, in the absence
of protein. This implies that there is no disc clustering or disc
fusion.
Conclusions
In this study, we investigated the interaction
of aSyn and lipid
bilayer discs composed of DMPC/DMPS lipids, with 30% of charged lipids.
We believe that the charged, DMPS, lipids accumulated at the curved
rims, and that the DMPC lipids preferentially populate the flat part
of the discs. However, there is still a significant fraction of charged
lipids in the flat part.The main findings of this paper are
summarized in Figure . The adsorption of aSyn monomers
onto the lipid bilayer disc surface results in a striking change of
the morphology of the discs. The initially circular discs assume highly
elongated shapes. In this shape transition, the length of the curved
rim increases 3–4 times. The fact that the area of the curved
part increases while the area of the flat part decreases implies that
aSyn has a preference for the curved part. When fibril formation is
initiated, the monomers appear to desorb from the disc surface to
instead be incorporated into the fibrils leading to the disc recovering
to its initial circular shape. By analyzing the SANS and cryo-TEM
data obtained at various time points, we find that the desorption
is cooperative, as was previously shown for aSyn adsorption to lipid
bilayers.[17]
Figure 6
An illustration of the
overall events suggested by the experimental
data. Top: circular lipid bilayer discs (blue) are incubated with
aSyn monomers (red). Bottom left: adsorption of aSyn monomers onto
lipid bilayer discs is a fast process that results in formation of
elongated structures that can be represented by parallelepipeds. Bottom
right: aSyn desorption is a cooperative and slow process that results
in a recovery of discs to their original shape.
An illustration of the
overall events suggested by the experimental
data. Top: circular lipid bilayer discs (blue) are incubated with
aSyn monomers (red). Bottom left: adsorption of aSyn monomers onto
lipid bilayer discs is a fast process that results in formation of
elongated structures that can be represented by parallelepipeds. Bottom
right: aSyn desorption is a cooperative and slow process that results
in a recovery of discs to their original shape.
Authors: Sarah H Shahmoradian; Amanda J Lewis; Christel Genoud; Jürgen Hench; Tim E Moors; Paula P Navarro; Daniel Castaño-Díez; Gabriel Schweighauser; Alexandra Graff-Meyer; Kenneth N Goldie; Rosmarie Sütterlin; Evelien Huisman; Angela Ingrassia; Yvonne de Gier; Annemieke J M Rozemuller; Jing Wang; Anne De Paepe; Johannes Erny; Andreas Staempfli; Joerg Hoernschemeyer; Frederik Großerüschkamp; Daniel Niedieker; Samir F El-Mashtoly; Marialuisa Quadri; Wilfred F J Van IJcken; Vincenzo Bonifati; Klaus Gerwert; Bernd Bohrmann; Stephan Frank; Markus Britschgi; Henning Stahlberg; Wilma D J Van de Berg; Matthias E Lauer Journal: Nat Neurosci Date: 2019-06-24 Impact factor: 24.884
Authors: Marie Grey; Christopher J Dunning; Ricardo Gaspar; Carl Grey; Patrik Brundin; Emma Sparr; Sara Linse Journal: J Biol Chem Date: 2014-11-25 Impact factor: 5.157
Authors: Alexander K Buell; Céline Galvagnion; Ricardo Gaspar; Emma Sparr; Michele Vendruscolo; Tuomas P J Knowles; Sara Linse; Christopher M Dobson Journal: Proc Natl Acad Sci U S A Date: 2014-05-09 Impact factor: 11.205