Literature DB >> 35949424

Multicolor plate reader fluorescence calibration.

Jacob Beal1, Cheryl A Telmer2, Alejandro Vignoni3, Yadira Boada3, Geoff S Baldwin4, Liam Hallett4, Taeyang Lee4, Vinoo Selvarajah5, Sonja Billerbeck6, Bradley Brown7, Guo-Nan Cai8, Liang Cai8, Edward Eisenstein9, Daisuke Kiga10, David Ross11, Nina Alperovich11, Noah Sprent12, Jaclyn Thompson13, Eric M Young13, Drew Endy14, Traci Haddock-Angelli5.   

Abstract

Plate readers are commonly used to measure cell growth and fluorescence, yet the utility and reproducibility of plate reader data is limited by the fact that it is typically reported in arbitrary or relative units. We have previously established a robust serial dilution protocol for calibration of plate reader measurements of absorbance to estimated bacterial cell count and for green fluorescence from proteins expressed in bacterial cells to molecules of equivalent fluorescein. We now extend these protocols to calibration of red fluorescence to the sulforhodamine-101 fluorescent dye and blue fluorescence to Cascade Blue. Evaluating calibration efficacy via an interlaboratory study, we find that these calibrants do indeed provide comparable precision to the prior calibrants and that they enable effective cross-laboratory comparison of measurements of red and blue fluorescence from proteins expressed in bacterial cells.
© The Author(s) 2022. Published by Oxford University Press.

Entities:  

Keywords:  calibration; cell count; fluorescence; units

Year:  2022        PMID: 35949424      PMCID: PMC9357555          DOI: 10.1093/synbio/ysac010

Source DB:  PubMed          Journal:  Synth Biol (Oxf)        ISSN: 2397-7000


  9 in total

1.  Characterization of Gene Circuit Parts Based on Multiobjective Optimization by Using Standard Calibrated Measurements.

Authors:  Yadira Boada; Alejandro Vignoni; Iván Alarcon-Ruiz; Carlos Andreu-Vilarroig; Roger Monfort-Llorens; Adrián Requena; Jesús Picó
Journal:  Chembiochem       Date:  2019-08-22       Impact factor: 3.164

2.  FPbase: a community-editable fluorescent protein database.

Authors:  Talley J Lambert
Journal:  Nat Methods       Date:  2019-04       Impact factor: 28.547

3.  A computational method for automated characterization of genetic components.

Authors:  Boyan Yordanov; Neil Dalchau; Paul K Grant; Michael Pedersen; Stephen Emmott; Jim Haseloff; Andrew Phillips
Journal:  ACS Synth Biol       Date:  2014-03-14       Impact factor: 5.110

4.  When Wavelengths Collide: Bias in Cell Abundance Measurements Due to Expressed Fluorescent Proteins.

Authors:  Ariel Hecht; Drew Endy; Marc Salit; Matthew S Munson
Journal:  ACS Synth Biol       Date:  2016-06-06       Impact factor: 5.110

5.  Genomic mining of prokaryotic repressors for orthogonal logic gates.

Authors:  Brynne C Stanton; Alec A K Nielsen; Alvin Tamsir; Kevin Clancy; Todd Peterson; Christopher A Voigt
Journal:  Nat Chem Biol       Date:  2013-12-08       Impact factor: 15.040

6.  Quantification of bacterial fluorescence using independent calibrants.

Authors:  Jacob Beal; Traci Haddock-Angelli; Geoff Baldwin; Markus Gershater; Ari Dwijayanti; Marko Storch; Kim de Mora; Meagan Lizarazo; Randy Rettberg
Journal:  PLoS One       Date:  2018-06-21       Impact factor: 3.240

7.  Robust estimation of bacterial cell count from optical density.

Authors:  Jacob Beal; Natalie G Farny; Traci Haddock-Angelli; Vinoo Selvarajah; Geoff S Baldwin; Russell Buckley-Taylor; Markus Gershater; Daisuke Kiga; John Marken; Vishal Sanchania; Abigail Sison; Christopher T Workman
Journal:  Commun Biol       Date:  2020-09-17

8.  Comparative analysis of three studies measuring fluorescence from engineered bacterial genetic constructs.

Authors:  Jacob Beal; Geoff S Baldwin; Natalie G Farny; Markus Gershater; Traci Haddock-Angelli; Russell Buckley-Taylor; Ari Dwijayanti; Daisuke Kiga; Meagan Lizarazo; John Marken; Kim de Mora; Randy Rettberg; Vishal Sanchania; Vinoo Selvarajah; Abigail Sison; Marko Storch; Christopher T Workman
Journal:  PLoS One       Date:  2021-06-07       Impact factor: 3.240

9.  Measuring the activity of BioBrick promoters using an in vivo reference standard.

Authors:  Jason R Kelly; Adam J Rubin; Joseph H Davis; Caroline M Ajo-Franklin; John Cumbers; Michael J Czar; Kim de Mora; Aaron L Glieberman; Dileep D Monie; Drew Endy
Journal:  J Biol Eng       Date:  2009-03-20       Impact factor: 4.355

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.