Literature DB >> 35901215

Informing geometric deep learning with electronic interactions to accelerate quantum chemistry.

Zhuoran Qiao1, Anders S Christensen2, Matthew Welborn2, Frederick R Manby2, Anima Anandkumar3,4, Thomas F Miller1,2.   

Abstract

Predicting electronic energies, densities, and related chemical properties can facilitate the discovery of novel catalysts, medicines, and battery materials. However, existing machine learning techniques are challenged by the scarcity of training data when exploring unknown chemical spaces. We overcome this barrier by systematically incorporating knowledge of molecular electronic structure into deep learning. By developing a physics-inspired equivariant neural network, we introduce a method to learn molecular representations based on the electronic interactions among atomic orbitals. Our method, OrbNet-Equi, leverages efficient tight-binding simulations and learned mappings to recover high-fidelity physical quantities. OrbNet-Equi accurately models a wide spectrum of target properties while being several orders of magnitude faster than density functional theory. Despite only using training samples collected from readily available small-molecule libraries, OrbNet-Equi outperforms traditional semiempirical and machine learning-based methods on comprehensive downstream benchmarks that encompass diverse main-group chemical processes. Our method also describes interactions in challenging charge-transfer complexes and open-shell systems. We anticipate that the strategy presented here will help to expand opportunities for studies in chemistry and materials science, where the acquisition of experimental or reference training data is costly.

Entities:  

Keywords:  equivariance; machine learning; quantum chemistry

Mesh:

Substances:

Year:  2022        PMID: 35901215      PMCID: PMC9351474          DOI: 10.1073/pnas.2205221119

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  65 in total

1.  A Robust and Accurate Tight-Binding Quantum Chemical Method for Structures, Vibrational Frequencies, and Noncovalent Interactions of Large Molecular Systems Parametrized for All spd-Block Elements (Z = 1-86).

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Journal:  J Chem Theory Comput       Date:  2017-04-24       Impact factor: 6.006

2.  Quantum machine learning using atom-in-molecule-based fragments selected on the fly.

Authors:  Bing Huang; O Anatole von Lilienfeld
Journal:  Nat Chem       Date:  2020-09-14       Impact factor: 24.427

3.  Embedded Mean-Field Theory for Solution-Phase Transition-Metal Polyolefin Catalysis.

Authors:  Leanne D Chen; James Joseph Lawniczak; Feizhi Ding; Peter J Bygrave; Saleh Riahi; Frederick R Manby; Sukrit Mukhopadhyay; Thomas Francis Miller
Journal:  J Chem Theory Comput       Date:  2020-05-22       Impact factor: 6.006

4.  Inclusion of More Physics Leads to Less Data: Learning the Interaction Energy as a Function of Electron Deformation Density with Limited Training Data.

Authors:  Kaycee Low; Michelle L Coote; Ekaterina I Izgorodina
Journal:  J Chem Theory Comput       Date:  2022-02-17       Impact factor: 6.006

5.  Informing geometric deep learning with electronic interactions to accelerate quantum chemistry.

Authors:  Zhuoran Qiao; Anders S Christensen; Matthew Welborn; Frederick R Manby; Anima Anandkumar; Thomas F Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-28       Impact factor: 12.779

6.  Δ-Quantum machine-learning for medicinal chemistry.

Authors:  Kenneth Atz; Clemens Isert; Markus N A Böcker; José Jiménez-Luna; Gisbert Schneider
Journal:  Phys Chem Chem Phys       Date:  2022-05-11       Impact factor: 3.945

7.  Pushing the frontiers of density functionals by solving the fractional electron problem.

Authors:  James Kirkpatrick; Brendan McMorrow; David H P Turban; Alexander L Gaunt; James S Spencer; Alexander G D G Matthews; Annette Obika; Louis Thiry; Meire Fortunato; David Pfau; Lara Román Castellanos; Stig Petersen; Alexander W R Nelson; Pushmeet Kohli; Paula Mori-Sánchez; Demis Hassabis; Aron J Cohen
Journal:  Science       Date:  2021-12-09       Impact factor: 63.714

8.  The roles of long-range proton-coupled electron transfer in the directionality and efficiency of [FeFe]-hydrogenases.

Authors:  Oliver Lampret; Jifu Duan; Eckhard Hofmann; Martin Winkler; Fraser A Armstrong; Thomas Happe
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-13       Impact factor: 11.205

9.  Dispersion and Steric Effects on Enantio-/Diastereoselectivities in Synergistic Dual Transition-Metal Catalysis.

Authors:  Bo Li; Hui Xu; Yanfeng Dang; K N Houk
Journal:  J Am Chem Soc       Date:  2022-01-20       Impact factor: 15.419

10.  TorsionNet: A Deep Neural Network to Rapidly Predict Small-Molecule Torsional Energy Profiles with the Accuracy of Quantum Mechanics.

Authors:  Brajesh K Rai; Vishnu Sresht; Qingyi Yang; Ray Unwalla; Meihua Tu; Alan M Mathiowetz; Gregory A Bakken
Journal:  J Chem Inf Model       Date:  2022-02-04       Impact factor: 4.956

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  1 in total

1.  Informing geometric deep learning with electronic interactions to accelerate quantum chemistry.

Authors:  Zhuoran Qiao; Anders S Christensen; Matthew Welborn; Frederick R Manby; Anima Anandkumar; Thomas F Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-28       Impact factor: 12.779

  1 in total

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