| Literature DB >> 35893236 |
Mirolyuba Ilieva1, Shizuka Uchida1.
Abstract
The cardiopulmonary system delivers oxygen throughout the body via blood circulation. It is an essential part of the body to sustain the lives of organisms. The integral parts of the cardiopulmonary system-the heart and lungs-are constantly exposed to damaging agents (e.g., dust, viruses), and can be greatly affected by injuries caused by dysfunction in tissues (e.g., myocardial infarction). When damaged, mesenchymal cells, such as fibroblasts, are activated to become myofibroblasts to initiate fibrosis as part of a regenerative mechanism. In diseased states, the excess accumulation of extracellular matrices secreted by myofibroblasts results in further dysfunction in the damaged organs. These fibrotic tissues cannot easily be removed. Thus, there is a growing interest in understanding the fibrotic process, as well as finding biomolecules that can be targets for slowing down or potentially stopping fibrosis. Among these biomolecules, the interest in studying long non-coding RNAs (lncRNAs; any non-protein-coding RNAs longer than 200 nucleotides) has intensified in recent years. In this commentary, we summarize the current status of lncRNA research in the cardiopulmonary system by focusing on cardiac and pulmonary fibrosis.Entities:
Keywords: cardiac; fibroblast; fibrosis; heart; lncRNA; lung
Year: 2022 PMID: 35893236 PMCID: PMC9326574 DOI: 10.3390/ncrna8040053
Source DB: PubMed Journal: Noncoding RNA ISSN: 2311-553X
Figure 1Role of lncRNAs in cardiac fibrosis: (A) Mechanisms of action of lncRNAs in the pathogenesis of cardiac fibrosis. (B) LncRNAs as miRNA sponges for cardiac fibromiRs. Please see Table 1 for mechanistic descriptions. Figure created with BioRender.com, accessed on 22 June 2022.
List of functionally and mechanistically characterized cardiac fibrotic lncRNAs.
| Name of LncRNA | Study Model | Function | Reference |
|---|---|---|---|
| Knockdown by siRNA in primary neonatal murine cardiac fibroblasts; knockdown by lentiviral shRNA in infarcted (permanent ligation of left anterior descending coronary artery) or hypertrophied murine hearts (injection of isoproterenol). | Binds COTL1 (coactosin-like F-actin-binding protein 1) to competitively inhibit its interaction with TRAP1 (TNF receptor-associated protein 1), which enhances TGF-β signaling by augmenting SMAD2/SMAD4 complex formation. | [ | |
| Overexpression by AAV9 (adeno-associated virus serotype 9) in infarcted murine hearts (permanent ligation of left anterior descending coronary artery) or intraperitoneal injection into postnatal 8–12-day-old mice; myocardial infarction in | Binds Ybx1 (Y box protein 1) under hypoxia to cause de-repression of collagen 1A1 expression. | [ | |
| Knockdown by GapmeR in primary adult murine cardiac fibroblasts or hypertrophied (transverse aortic constriction) murine hearts. | Interacts with P53 to regulate the expression of | [ | |
| Knockdown by siRNA or overexpression by adenovirus in primary neonatal murine cardiac fibroblasts treated with TGF-β1. | Binds Ezh2 to recruit it to the promoter of | [ | |
| Knockdown by shRNA or CRISPR/Cas9-mediated knockout in primary adult murine cardiac fibroblasts treated with TGF-β; knockdown by lentiviral shRNA or overexpression by lentivirus in infarcted murine hearts (permanent ligation of left anterior descending coronary artery). | Promotes the | [ | |
| Knockdown by siRNA or overexpression by plasmids in primary neonatal murine cardiac fibroblasts or human cardiac fibroblasts treated with TGF-β1; overexpression by Ad5 (adenovirus serotype 5) in infarcted murine hearts (permanent ligation of left anterior descending coronary artery). | Binds with SAFB (scaffold attachment factor B) to block its access to RNA pol II (RNA polymerase II), and reduces the transcription of fibrosis-related genes. | [ | |
| Knockdown by GapmeR in primary neonatal and adult murine cardiac fibroblasts, primary adult murine lung fibroblasts, primary human cardiac fibroblasts, and infarcted murine hearts (permanent ligation of left anterior descending coronary artery); overexpression by CRISPR-on in P19CL6 cells. | Interacts with Tial1 (Tia1 cytotoxic granule-associated RNA-binding protein-like 1, also known as TIAR) to regulate alternative splicing of | [ |
Figure 2Role of lncRNAs in pulmonary fibrosis: (A) Mechanisms of action of lncRNAs in the pathogenesis of pulmonary fibrosis. (B) LncRNAs as miRNA sponges for pulmonary fibromiRs. Please see Table 2 for mechanistic descriptions. Figure created with BioRender.com, accessed on 22 June 2022.
List of functionally and mechanistically characterized pulmonary fibrotic lncRNAs.
| Name of LncRNA | Study Model | Function | Reference |
|---|---|---|---|
| Knockdown by GapmeR in the human lung fibroblastic cell line MRC5 and a murine bleomycin-induced lung fibrosis model. | Encodes three fibromiRs ( | [ | |
| Knockdown by lentiviral shRNA in human lung fibroblastic cell line LL29; overexpression by adenovirus in a murine asbestos-induced lung fibrosis model. | Binds SRSF9 (serine- and arginine-rich splicing factor 9) to inhibit the phosphorylation of RPS6KB1 (ribosomal protein S6 kinase B1, also known as PS6K), thereby suppressing the proliferation of fibroblasts. | [ | |
| Knockdown by lentiviral shRNA in the human lung fibroblastic cell lines HFL1 and LL29; overexpression by adenovirus in a murine bleomycin-induced lung fibrosis model. | Interacts with ACO1 (aconitase 1, also known as IRP1) to decrease cellular iron concentration and sequester pro-fibrotic | [ | |
| Exosomes isolated from the murine lung epithelial cell line MLE-12 and co-cultured with primary murine lung fibroblasts; overexpressed by lentivirus in the murine lung epithelial cell line MLE-12, extracted exosomes, and then injected exosomes and lentivirus into a murine bleomycin-induced lung fibrosis model. | Released via exosomes from alveolar epithelial cells to lung fibroblasts, where it sequesters | [ | |
| Knockdown by siRNA and overexpression by adenovirus in the human lung fibroblast cell line MRC-5; overexpression by adenovirus in the murine fibroblast cell line L929; overexpression by adenovirus in a murine bleomycin-induced lung fibrosis model. | Formed an RNA–protein complex with ELAVL1 to inhibit autophagosome fusion with a lysosome by controlling the stability of | [ | |
| Knockdown by siRNA and overexpression in the human lung fibroblast cell line MRC-5; knockdown by lentiviral shRNA in a murine bleomycin-induced lung fibrosis model. | Binds HNRNPL (heterogeneous nuclear ribonucleoprotein L) to epigenetically regulate its host gene, | [ | |
| Knockdown by LncRNA Smart Silencer and overexpression in primary murine lung fibroblasts; PFI transgenic (TG-PFI) mice with a murine bleomycin-induced lung fibrosis model. | Binds Srsf1 (serine and arginine-rich splicing factor 1) to repress its expression and pro-fibrotic activity. | [ |
List of cardiac and pulmonary fibrotic lncRNAs functioning as miRNA sponges: In the Cardiac Fibrosis and Pulmonary Fibrosis columns, miRNAs and their target mRNAs are shown, which are separated by a forward slash. When there are multiple entries (i.e., miRNA/target mRNA) for each column, each entry is separated by a semicolon. This applies to the corresponding references as well.
| Name of lncRNA | Cardiac Fibrosis | References | Pulmonary Fibrosis | References |
|---|---|---|---|---|
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