| Literature DB >> 35887684 |
Hristo Y Ivanov1,2, Denitsa Grigorova3,4, Volker M Lauschke5,6,7, Branimir Velinov8, Kaloyan Stoychev9,10, Gergana Kyosovska8,11, Peter Shopov3,12.
Abstract
CYP2D6 and CYP2C19 are enzymes of essential significance for the pharmacokinetics of a multitude of commonly used antidepressants, antipsychotics, antiemetics, β-blockers, opioids, antiestrogen, antacids, etc. Polymorphisms in the respective genes are well established as resulting in functional differences, which in turn can impact safety and efficacy. Importantly, the prevalence of genetic CYP2D6 and CYP2C19 variability differs drastically between populations. Drawing on the limited information concerning genotype frequencies in Bulgaria, we here analyzed 742 Bulgarian psychiatric patients predominantly diagnosed with depression and/or anxiety. Specifically, we analyzed frequencies of CYPC19*2, *4 and *17, as well as of CYP2D6*2, *3, *4, *5, *6, *10 and *41. In total, 571 out of 742 patients (77%) carried at least one variant which impacts metabolizer status. Overall, 48.6% of the studied individuals were classified as non-normal metabolizers of CYP2D6 with most exhibiting reduced function (38.2% intermediate metabolizers and 6.6% poor metabolizers). In contrast, for CYP2C19, the majority of non-normal metabolizers showed increased functionality (28.9% rapid and 5.5% ultrarapid metabolizers), while reduced activity metabolizer status accounted for 25.6% (23.8% intermediate and 1.8% poor metabolizers). These results provide an important resource to assess the genetically encoded functional variability of CYP2D6 and CYP2C19 which may have significant implications for precision medicine in Bulgarian psychiatry practice.Entities:
Keywords: CYP2C19; CYP2D6; cytochrome P450; pharmacogenetics; pharmacokinetics; population genetics; precision public health
Year: 2022 PMID: 35887684 PMCID: PMC9321582 DOI: 10.3390/jpm12071187
Source DB: PubMed Journal: J Pers Med ISSN: 2075-4426
Haplotype and diplotype frequencies of CYP2C19.
| SNP | N | Genotype | Χ2 | Df | MAF (%) | ||||
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| Bulgarian psychiatric cohort | 742 | 733 (98.79) | 9 | 2.7 | 0.1 i | 1 | |||
| 1000 Genomes | 503 | 502 (99.80) | 1 | ||||||
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| Bulgarian psychiatric cohort | 742 | 443 (59.70) | 259 (34.91) | 40 | 0.72 | 0.7 i | 2 | ||
| 1000 Genomes | 503 | 300 (59.64) | 181 (35.98) | 22 | |||||
| Pendicheva et al., 2017 | 142 | 69 (48.59) | 65 (45.77) | 8 (5.63) | 6.4 | 0.04 ii | 2 | ||
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| Bulgarian psychiatric cohort | 742 | 12 (1.62) | 170 (22.91) | 560 (75.47) | 2.5 | 0.3 i | 2 | ||
| 1000 Genomes | 503 | 6 | 134 (26.64) | 363 (72.17) | |||||
| Pendicheva et al., 2017 | 142 | 4 | 32 (22.54) | 106 (74.65) | 0.97 | 0.6 ii | 2 | ||
i X2 test for Bulgarian psychiatric cohort (study sample) and 1000 Genomes Project; ii X2 test for Bulgarian psychiatric cohort (study sample) and Pendicheva’s sample.
Diplotype distribution for CYP2C19.
| *1/*1 | *1/*17 | *1/*2 | *1/*4 | *17/*17 | *2/*17 | *2/*2 | *2/*4 | |
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| 293 | 212 | 121 | 7 | 40 | 46 | 12 | 1 |
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| 40.0 | 29.0 | 16.5 | 0.96 | 5.5 | 6.3 | 1.6 | 0.14 |
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| NM | RM | IM | IM | UM | IM | PM | PM |
Haplotype and diplotype frequencies of CYP2D6.
| SNP | N | Genotype | Χ2 | Df | MAF (%) | ||||
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| Bulgarian psychiatric cohort | 742 | 10 | 732 (98.65) | 4.1 | 0.04 i | 1 | |||
| 1000 Genomes | 503 | 16 | 487 (96.82) | ||||||
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| Bulgarian psychiatric cohort | 742 | 470 | 237 | 35 | 0.34 | 0.8 i | 2 | ||
| 1000 Genomes | 503 | 325 | 153 | 25 | |||||
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| Bulgarian psychiatric cohort | 742 | 603 | 124 (16.71) | 15 | 0.87 | 0.6 i | 2 | ||
| 1000 Genomes | 503 | 416 | 80 (15.90) | 7 | |||||
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| Bulgarian psychiatric cohort | 742 | 491 | 217 (29.25) | 34 | 0.22 | 0.9 i | 2 | ||
| 1000 Genomes | 503 | 339 | 141 (28.03) | 23 | |||||
| Pendicheva et al., 2017 | 59 | 33 | 23 (38.98) | 3 | 2.6 | 0.3 ii | 2 | ||
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| Bulgarian psychiatric cohort | 742 | 12 | 730 (98.38) | 5.8 | 0.02 i | 1 | |||
| 1000 Genomes | 503 | 20 | 483 (96.02) | ||||||
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| Bulgarian psychiatric cohort | 742 | 296 | 339 (45.69) | 107 (14.42) | 5.72 | 0.06 i | 2 | ||
| 1000 Genomes | 503 | 232 | 197 (39.17) | 74 (14.71) | |||||
i X2 test for Bulgarian psychiatric cohort (study sample) and 1000 Genomes Project; ii X2 test for Bulgarian psychiatric cohort (study sample) and Pendicheva’s sample.
Diplotype distribution and allele frequencies for CYP2D6*5 (CYP2D6 gene deletion—DEL) and functional gene duplications (CYP2D6*1 × N or CYP2D6*2 × N—DUP).
| DUP | NORM/DEL | NORM/NORM | MAF DUP (%) | MAF DEL (%) |
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| 47 | 25 | 670 | 3.17 | 1.68 |
Diplotype distribution for CYP2D6.
| *1/*1 | *1/*1DUP | *1/*2 | *1/*2DUP | *1/*3 | *1/*4 | *1/*6 | *2/*2 | *2/*2DUP | |
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| 101 | 4 | 144 | 13 | 4 | 105 | 5 | 43 | 4 |
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| 18.0 | 0.71 | 25.7 | 2.3 | 0.71 | 18.8 | 0.89 | 7.7 | 0.71 |
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| NM | UM | NM | UM | IM | IM | IM | NM | UM |
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| 3 | 73 | 4 | 1 | 33 | 1 | 2 | 12 | 8 |
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| 0.54 | 13.0 | 0.71 | 0.18 | 5.9 | 0.18 | 0.36 | 2.1 | 1.4 |
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| IM | IM | IM | PM | PM | PM | PM | IM | IM |
Phenotype distributions for CYP2D6 and CYP2C19.
| Gene | Phenotype | ||||
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| PM (%) | IM (%) | NM (%) | RM (%) | UM (%) | |
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| 37 (6.6) | 214 (38.2) | 288 (51.4) | N/A | 21 (3.8) |
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| 13 (1.8) | 174 (23.8) | 293 (40.0) | 212 (28.9) | 40 (5.5) |