Literature DB >> 34118403

Recommendations for Clinical CYP2D6 Genotyping Allele Selection: A Joint Consensus Recommendation of the Association for Molecular Pathology, College of American Pathologists, Dutch Pharmacogenetics Working Group of the Royal Dutch Pharmacists Association, and the European Society for Pharmacogenomics and Personalized Therapy.

Victoria M Pratt1, Larisa H Cavallari2, Andria L Del Tredici3, Andrea Gaedigk4, Houda Hachad5, Yuan Ji6, Lisa V Kalman7, Reynold C Ly8, Ann M Moyer9, Stuart A Scott10, R H N van Schaik11, Michelle Whirl-Carrillo12, Karen E Weck13.   

Abstract

The goals of the Association for Molecular Pathology Clinical Practice Committee's Pharmacogenomics (PGx) Working Group are to define the key attributes of pharmacogenetic alleles recommended for clinical testing, and to determine a minimal set of variants that should be included in clinical PGx genotyping assays. This document series provides recommendations on a minimal panel of variant alleles (Tier 1) and an extended panel of variant alleles (Tier 2) that will aid clinical laboratories in designing assays for PGx testing. When developing these recommendations, the Association for Molecular Pathology PGx Working Group considered the functional impact of the variant alleles, allele frequencies in multiethnic populations, the availability of reference materials, as well as other technical considerations with regard to PGx testing. The ultimate goal of this Working Group is to promote standardization of PGx gene/allele testing across clinical laboratories. This document is focused on clinical CYP2D6 PGx testing that may be applied to all cytochrome P450 2D6-metabolized medications. These recommendations are not meant to be interpreted as prescriptive but to provide a reference guide for clinical laboratories that may be either implementing PGx testing or reviewing and updating their existing platform.
Copyright © 2021 Association for Molecular Pathology and American Society for Investigative Pathology. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2021        PMID: 34118403      PMCID: PMC8579245          DOI: 10.1016/j.jmoldx.2021.05.013

Source DB:  PubMed          Journal:  J Mol Diagn        ISSN: 1525-1578            Impact factor:   5.341


  82 in total

1.  Standardized Biogeographic Grouping System for Annotating Populations in Pharmacogenetic Research.

Authors:  Rachel Huddart; Alison E Fohner; Michelle Whirl-Carrillo; Genevieve L Wojcik; Christopher R Gignoux; Alice B Popejoy; Carlos D Bustamante; Russ B Altman; Teri E Klein
Journal:  Clin Pharmacol Ther       Date:  2019-01-21       Impact factor: 6.875

2.  Clinical practice guideline: CYP2D6 genotyping for safe and efficacious codeine therapy.

Authors:  Parvaz Madadi; Ursula Amstutz; Michael Rieder; Shinya Ito; Vincent Fung; Soomi Hwang; Jacques Turgeon; Veronique Michaud; Gideon Koren; Bruce C Carleton
Journal:  J Popul Ther Clin Pharmacol       Date:  2013-11-06

3.  An additional allelic variant of the CYP2D6 gene causing impaired metabolism of sparteine.

Authors:  D Marez; M Legrand; N Sabbagh; J M Lo-Guidice; P Boone; F Broly
Journal:  Hum Genet       Date:  1996-05       Impact factor: 4.132

4.  Genotype and Phenotype Concordance for Pharmacogenetic Tests Through Proficiency Survey Testing: An Update.

Authors:  Ann M Moyer; Gwendolyn A McMillin; Thomas A Long; Manish J Gandhi; Rong Mao; Kristi J Smock; Jaimie G Halley; Karen E Weck
Journal:  Arch Pathol Lab Med       Date:  2020-03-09       Impact factor: 5.534

Review 5.  Recommendations for Clinical CYP2C19 Genotyping Allele Selection: A Report of the Association for Molecular Pathology.

Authors:  Victoria M Pratt; Andria L Del Tredici; Houda Hachad; Yuan Ji; Lisa V Kalman; Stuart A Scott; Karen E Weck
Journal:  J Mol Diagn       Date:  2018-02-21       Impact factor: 5.568

6.  Characterization of 137 Genomic DNA Reference Materials for 28 Pharmacogenetic Genes: A GeT-RM Collaborative Project.

Authors:  Victoria M Pratt; Robin E Everts; Praful Aggarwal; Brittany N Beyer; Ulrich Broeckel; Ruth Epstein-Baak; Paul Hujsak; Ruth Kornreich; Jun Liao; Rachel Lorier; Stuart A Scott; Chingying Huang Smith; Lorraine H Toji; Amy Turner; Lisa V Kalman
Journal:  J Mol Diagn       Date:  2015-11-24       Impact factor: 5.568

7.  CYP2D6 Haplotype Determination Using Long Range Allele-Specific Amplification: Resolution of a Complex Genotype and a Discordant Genotype Involving the CYP2D6*59 Allele.

Authors:  Andrea Gaedigk; Amanda K Riffel; J Steven Leeder
Journal:  J Mol Diagn       Date:  2015-09-01       Impact factor: 5.568

8.  Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes.

Authors:  Ibrahim Numanagić; Salem Malikić; Michael Ford; Xiang Qin; Lorraine Toji; Milan Radovich; Todd C Skaar; Victoria M Pratt; Bonnie Berger; Steve Scherer; S Cenk Sahinalp
Journal:  Nat Commun       Date:  2018-02-26       Impact factor: 14.919

9.  Inherited amplification of an active gene in the cytochrome P450 CYP2D locus as a cause of ultrarapid metabolism of debrisoquine.

Authors:  I Johansson; E Lundqvist; L Bertilsson; M L Dahl; F Sjöqvist; M Ingelman-Sundberg
Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-15       Impact factor: 11.205

10.  Cypiripi: exact genotyping of CYP2D6 using high-throughput sequencing data.

Authors:  Ibrahim Numanagić; Salem Malikić; Victoria M Pratt; Todd C Skaar; David A Flockhart; S Cenk Sahinalp
Journal:  Bioinformatics       Date:  2015-06-15       Impact factor: 6.937

View more
  16 in total

1.  Pharmacogenetics: A Precision Medicine Approach to Combatting the Opioid Epidemic.

Authors:  D Max Smith; James M Stevenson; Teresa T Ho; Christine M Formea; Roseann S Gammal; Larisa H Cavallari
Journal:  J Am Coll Clin Pharm       Date:  2021-12-19

2.  Implementing a pragmatic clinical trial to tailor opioids for acute pain on behalf of the IGNITE ADOPT PGx investigators.

Authors:  Larisa H Cavallari; Emily Cicali; Kristin Wiisanen; Roger B Fillingim; Hrishikesh Chakraborty; Rachel A Myers; Kathryn V Blake; Bolanle Asiyanbola; Jordan F Baye; Wesley H Bronson; Kelsey J Cook; Erica N Elwood; Chancellor F Gray; Yan Gong; Lindsay Hines; Joseph Kannry; Natalie Kucher; Sheryl Lynch; Khoa A Nguyen; Aniwaa Owusu Obeng; Victoria M Pratt; Hernan A Prieto; Michelle Ramos; Azita Sadeghpour; Rajbir Singh; Marc Rosenman; Petr Starostik; Cameron D Thomas; Emma Tillman; Paul R Dexter; Carol R Horowitz; Lori A Orlando; Josh F Peterson; Todd C Skaar; Sara L Van Driest; Simona Volpi; Deepak Voora; Hari K Parvataneni; Julie A Johnson
Journal:  Clin Transl Sci       Date:  2022-08-04       Impact factor: 4.438

3.  Characterization of Reference Materials for TPMT and NUDT15: A GeT-RM Collaborative Project.

Authors:  Victoria M Pratt; Wendy Y Wang; Erin C Boone; Ulrich Broeckel; Neal Cody; Lisa Edelmann; Andrea Gaedigk; Ty C Lynnes; Elizabeth B Medeiros; Ann M Moyer; Matthew W Mitchell; Stuart A Scott; Petr Starostik; Amy Turner; Lisa V Kalman
Journal:  J Mol Diagn       Date:  2022-08-02       Impact factor: 5.341

4.  The importance of phenoconversion when using the CYP2D6 genotype in clinical practice.

Authors:  Emily J Cicali; Kristin Wiisanen
Journal:  Pharmacogenomics       Date:  2022-09-14       Impact factor: 2.638

5.  Pharmacogenomics in Children.

Authors:  Michael J Rieder; Abdelbaset A Elzagallaai
Journal:  Methods Mol Biol       Date:  2022

6.  Analytical Validation of a Computational Method for Pharmacogenetic Genotyping from Clinical Whole Exome Sequencing.

Authors:  Reynold C Ly; Tyler Shugg; Ryan Ratcliff; Wilberforce Osei; Ty C Lynnes; Victoria M Pratt; Bryan P Schneider; Milan Radovich; Steven M Bray; Benjamin A Salisbury; Baiju Parikh; S Cenk Sahinalp; Ibrahim Numanagić; Todd C Skaar
Journal:  J Mol Diagn       Date:  2022-04-20       Impact factor: 5.341

Review 7.  PharmVar GeneFocus: CYP3A5.

Authors:  Cristina Rodriguez-Antona; Jessica L Savieo; Volker M Lauschke; Katrin Sangkuhl; Britt I Drögemöller; Danxin Wang; Ron H N van Schaik; Andrei A Gilep; Arul P Peter; Erin C Boone; Bronwyn E Ramey; Teri E Klein; Michelle Whirl-Carrillo; Victoria M Pratt; Andrea Gaedigk
Journal:  Clin Pharmacol Ther       Date:  2022-02-24       Impact factor: 6.903

8.  Targeted Genotyping in Clinical Pharmacogenomics: What Is Missing?

Authors:  Jaime L Lopes; Kimberley Harris; Mary Beth Karow; Sandra E Peterson; Michelle L Kluge; Katrina E Kotzer; Guilherme S Lopes; Nicholas B Larson; Suzette J Bielinski; Steven E Scherer; Liewei Wang; Richard M Weinshilboum; John L Black; Ann M Moyer
Journal:  J Mol Diagn       Date:  2022-01-15       Impact factor: 5.341

9.  Methodology for clinical genotyping of CYP2D6 and CYP2C19.

Authors:  Beatriz Carvalho Henriques; Avery Buchner; Xiuying Hu; Yabing Wang; Vasyl Yavorskyy; Keanna Wallace; Rachael Dong; Kristina Martens; Michael S Carr; Bahareh Behroozi Asl; Joshua Hague; Sudhakar Sivapalan; Wolfgang Maier; Mojca Z Dernovsek; Neven Henigsberg; Joanna Hauser; Daniel Souery; Annamaria Cattaneo; Ole Mors; Marcella Rietschel; Gerald Pfeffer; Stacey Hume; Katherine J Aitchison
Journal:  Transl Psychiatry       Date:  2021-11-22       Impact factor: 6.222

10.  Untangling SNP Variations within CYP2D6 Gene in Croatian Roma.

Authors:  Anita Stojanović Marković; Matea Zajc Petranović; Željka Tomas; Borna Puljko; Maja Šetinc; Tatjana Škarić-Jurić; Marijana Peričić Salihović
Journal:  J Pers Med       Date:  2022-02-28
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.